TCONS_00064451-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064451-protein
Unique NameTCONS_00064451-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length912

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064451-protein ID=TCONS_00064451-protein|Name=TCONS_00064451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=912bp
MTFKNNISRSHCSYCQCSAGNNVSCYKFDINKNRTTVCQNCQKIPFVISC
SYCSNPFYSKDLSNASKVETGESIKVPSLECVKCQCSRSGNFGCNYINKD
RCYDVSACSLMFDRLRNGTSRAKYVCSNCLFDGQPKSPYSTWMVLIHGLN
ISCSCGHTGDVSCKSTKPMFIGGIEIARTCRNCSNSETLNEEFRNRGCSI
RGVNLTHNSCQFISKDSTYHCFQCACYMGQLKCLLPQRWGTRMYPCVGRE
CLEIYGDPWTSNRCSNPVEWNRCPRGHSFNWTTEFCNITCNNGKKSYTEL
KERWCAPLGMPEPCQQCPDRRKFFVKYKDLVQRCRDSLQYTWKDQICDTR
EDCPDGSDEENCEKYNCRYNEDRNGIVWPPTEVNTVAYLPCNRVEKGPDF
QGELSRKCVFSKQNQTIWGSTTFCECNRSNVPKFVKPASMVCNITTLDHL
LNSMKALQNHGNGSPHLRSHVMEAEKILQTMFDLCKDEVPENGHSLRNTE
QSGTEDSSPANRSSTKKPVLKRPFLFINVGAGIYSKQYKSILQAAYSLLA
IQVPCKERASQSFWWIFGNATKHFKVDSLLTPYSHAVSLGSKRNWFGVSE
LQMQETFQSMILSNNGSLPVMLVPQKKLIRGIPVRSNLDRLEEILSGISI
AFLALGLLAFQMIRKKTMKIRIHQNLLLVFLLSFLVLKIPLWFVPALPEK
STAGCFVVSLSSYFFTLCTLSWMMVEGINIVILVVFVFQHHKNKLFKLYL
LIGYGFPLVLTALFGSIFTNSFQNADFCTALGGDHIWLLKGPLTLMLVIN
VILLLMIISAISKASKRSKSWKNTKRTSSSMKTFLVLVPLLGLPFILAPF
VEYNKYIAYAFVLMNSLSGFYLFIGHVLMDPAIKDQISRQTRRFGGQSLS
GADKTDSTNHKQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040414XLOC_040414Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064451TCONS_00064451Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR001879GPCR_2_extracellular_dom
IPR002172LDrepeatLR_classA_rpt
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0005515protein binding
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000832GPCR, family 2, secretin-likePRINTSPR00249GPCRSECRETINcoord: 787..812
score: 29.47
coord: 671..695
score: 26.17
coord: 640..664
score: 20.95
coord: 707..730
score: 23.16
coord: 746..771
score: 25.42
coord: 830..850
score: 37.85
IPR000832GPCR, family 2, secretin-likePFAMPF000027tm_2coord: 646..871
e-value: 1.2E-32
score: 113.1
NoneNo IPR availableGENE3D4.10.1220.10coord: 332..369
e-value: 4.7E-6
score: 26.0
NoneNo IPR availableGENE3D1.20.1070.10coord: 642..912
e-value: 7.5E-23
score: 80.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 493..516
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 893..912
NoneNo IPR availableCDDcd00112LDLacoord: 343..362
e-value: 0.0013552
score: 36.801
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 679..871
IPR001879GPCR, family 2, extracellular hormone receptor domainPROSITEPS50227G_PROTEIN_RECEP_F2_3coord: 333..430
score: 10.096
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 316..363
score: 8.913
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 638..880
score: 25.908

Blast
[Close]
BLAST of TCONS_00064451-protein vs. Swiss-Prot (Human)
Match: AGRD1 (Adhesion G-protein coupled receptor D1 OS=Homo sapiens GN=ADGRD1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.161e-18
Identity = 69/281 (24.56%), Postives = 134/281 (47.69%), Query Frame = 0 
Query:  620 VMLVPQKKLIRGIPVRSNLDRLEEILSGISIAFLALGLLAFQMIRK----KTMKIRIHQNLLLVFLLSFLVLKIPLWFVPALPEKSTAGCFVVSLSSYFFTLCTLSWMMVEGINIVILVVFVFQHHKNKLFKLYLLIGYGFPLVLTALFGSIFTNSFQNADFC-TALGGDHIWLLKGPLTLMLVINVILLLMIISAISKASKRS-KSWKNTKRTSSSMKTFLVLVPLLGLPFILAPFVEYNKYIA--YAFVLMNSLSGFYLFIGHVLMDPAIKDQISRQTR 892
            +M V   +L RG  V   L  +  +   +S+  L   L+ F ++      +  +  IH NL    L++ ++L I     P      T  C V+++  ++F L   +WM+VEG+++  +V+ VF    +K  + Y  +G+GFPL++  +  S   +S+  ++ C  +L    IW    P   ++V+N+ +L+ +   IS+ S  + K   +      + K   VL+P+LG  ++          +   Y F  +NSL G ++F+ H L++  ++     +T+
Sbjct:  550 LMQVVPLELARGHQVA--LSSISYVGCSLSVLCLVATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFRLEPG-----TTPCQVMAVLLHYFFLSAFAWMLVEGLHLYSMVIKVFGSEDSK-HRYYYGMGWGFPLLICIISLSFAMDSYGTSNNCWLSLASGAIWAFVAPALFVIVVNIGILIAVTRVISQISADNYKIHGDPSAFKLTAKAVAVLLPILGTSWVFGVLAVNGCAVVFQYMFATLNSLQGLFIFLFHCLLNSEVRAAFKHKTK 822
The following BLAST results are available for this feature:
BLAST of TCONS_00064451-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRD13.161e-1824.56Adhesion G-protein coupled receptor D1 OS=Homo sap... [more]
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