TCONS_00064376-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064376-protein
Unique Name	TCONS_00064376-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	250

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064376-protein ID=TCONS_00064376-protein|Name=TCONS_00064376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MDFQQSDYGGGNDGFYNTNYEQQSYGYDNSQQTQPYGGYDQSAYNQPYAP
PPQPQVFSPNFSEPKANANNTGGGYTNFDDEPPLLEELGINFEHITLTTK
SVLNPLHQTDASVMDDSDLAGPLVFCVAFGGFLLLSGKVHGFGYIYGVGV
LGCLCMYAVLNLMSMTGVTLTCTISVLGYCLLPMVILSGLSVVFTLTGTL
GTILTGVVILWCSFSASKLFVTVLAMDHQQPLVAYPCALLYGVFALLTVF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040361	XLOC_040361	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064376	TCONS_00064376	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006977	Yip1

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006977	Yip1 domain	PFAM	PF04893	Yip1	coord: 113..234 e-value: 1.4E-8 score: 34.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Blast

[Close]

BLAST of TCONS_00064376-protein vs. Swiss-Prot (Human)
Match: YIPF5 (Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.770e-84
Identity = 136/253 (53.75%), Postives = 175/253 (69.17%), Query Frame = 0

Query:   12 NDGFYNTNYE-----QQSYGYDNS--QQTQPYGGYDQSAYNQPYAP----PPQP---QVFSPNFSEPKANANNTGGGYTNFDDEPPLLEELGINFEHITLTTKSVLNPLHQTDASVMDDSDLAGPLVFCVAFGGFLLLSGKVHGFGYIYGVGVLGCLCMYAVLNLMSMTGVTLTCTISVLGYCLLPMVILSGLSVVFTLTGTLGTILTGVVILWCSFSASKLFVTVLAMDHQQPLVAYPCALLYGVFALLTVF 250
            N  FY T+Y      QQSY Y  S    ++ Y GYD S   +   P    P QP   Q++ P  +   A+     G   NF+DEPPLLEELGINF+HI   T +VL+PL   D S+M+++DLAGP+VFC+AFG  LLL+GK+  FGY+YG+  +GCL M+ +LNLMSMTGV+  C  SVLGYCLLPM++LS  +V+F+L G +G ILT  +I WCSFSASK+F++ LAM+ QQ LVAYPCALLYGVFAL++VF
Sbjct:    8 NTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYG--NNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQ-FGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257

The following BLAST results are available for this feature:

BLAST of TCONS_00064376-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064376-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
YIPF5	5.770e-84	53.75	Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1	[more]

You are here

TCONS_00064376-protein (polypeptide) - C. hemisphaerica