TCONS_00064344-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064344-protein
Unique Name	TCONS_00064344-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1069

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064344-protein ID=TCONS_00064344-protein|Name=TCONS_00064344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1069bp
MKSVTPENMKNLQMAIETMRERGMENDPRYQQMLNLARMNGMNFPNTGMP
PAMNNPMMQPGMPGMMQPNPYAMMNQRQSMGMNMQGAGGQPPETFQMTQP
GLANPNGMAAAGQPNSTPGAQTPSPSTGAPGTQQPQQGTQQPGQTPNQPQ
TQQQGPPQLQPQATPQQSGQQQQQQNANQAAAIAQGLKNSSFSPDMLQQF
RAQIVAYKLFSRNQPVPDHVAMAAMGRKPPGQPQAEANQTGQPKPIEPKK
EDTPESETADAKKKELTLDPAVKTPKKIPSLNSPPKSRFAPVTKPMGIDP
VDIMKEREFRIQSRIVHRIDQLQNLPASITESLRTKALIELKALRLLNFQ
KQLRSEMVTSMRKDTTLETALNYRAYKRSKRQTLREARMTERLEKQQKLE
VEKKKRAKHLEFINALLQHGREFREFHRSAQSRIQKTNKVIMGYHANFDR
EKRKEEERLERERLRMLMAEDEDGYRQLIDEKKNQRLHYLLSQTDEYITG
LMMLVSQHKKEVDIKKRPKKSRRKTEDDDEEARHVPVENIETGVKLTGDD
APLSTELDQWLIENPGFKVMAEQDEEEDGEEDENEAESKKEGGDKEKKKE
YEDDDAGTSMDSRNYYSLAHSTLEIIKEQPKSLVGGTLKEYQVKGLEWMV
SLYNNNLNGILADEMGLGKTIQTIALITYLVEKKKMNGPFLIILPLSTMS
NWVLEFEKWAPSIIAISYKGSPTYRREAAQQIRMGRFNVVMTTYEYVMKD
KAVLSKVKWKYMIVDEGHRMKNHNCKLTQTLNTHYLAPFRILLTGTPLQN
RLPELWALMNFLLPSIFNSSSTFESWFNAPFAMTGEKIELNEEETLLIIR
RLHKVLRPFLLRRLKKEVESQLPDKVEFIVKCDMSALQKIIYKHMQTKGI
LLTDGSEKDKDKKGKGGTKMLMNTIMQLRKICNHPFMFQHIEEAIAEHTG
HANGVVSGRDIVRVSGKFDILDKMLSKLAVTGHKSLIFCQMTQCMTIMED
YLNWKQMPYLRLDGTTKADDRSDLLKIFNAKDSPYMVFLLSTRAGGLGLN
LQSADTVIIFDSDWNPHQV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040344	XLOC_040344	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064344	TCONS_00064344	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR006576	BRK_domain
IPR001650	Helicase_C
IPR014012	HSA_dom
IPR014978	Gln-Leu-Gln_QLQ
IPR000330	SNF2_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0016817	hydrolase activity, acting on acid anhydrides
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016817	hydrolase activity, acting on acid anhydrides
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 445..472
None	No IPR available	GENE3D	3.40.50.10810		coord: 574..862 e-value: 3.8E-57 score: 192.7
None	No IPR available	GENE3D	3.40.50.300		coord: 956..1069 e-value: 8.3E-20 score: 70.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 572..613
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..551
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..182
None	No IPR available	CDD	cd00046	DEXDc	coord: 658..797 e-value: 3.18085E-24 score: 99.7191
None	No IPR available	CDD	cd00079	HELICc	coord: 965..1068 e-value: 1.26548E-19 score: 86.1376
None	No IPR available	SUPERFAMILY	160481	BRK domain-like	coord: 533..593
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 634..826 e-value: 1.3E-36 score: 137.7
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 650..815 score: 25.385
IPR006576	BRK domain	SMART	SM00592	122neu5	coord: 529..574 e-value: 3.4E-8 score: 43.2
IPR006576	BRK domain	PFAM	PF07533	BRK	coord: 533..571 e-value: 2.8E-12 score: 46.0
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 996..1067 e-value: 4.9E-8 score: 42.7
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 967..1068 e-value: 1.6E-14 score: 54.1
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 970..1069 score: 12.277
IPR014012	Helicase/SANT-associated domain	SMART	SM00573	bromneu2	coord: 397..469 e-value: 6.9E-18 score: 75.4
IPR014012	Helicase/SANT-associated domain	PFAM	PF07529	HSA	coord: 400..468 e-value: 1.0E-13 score: 51.3
IPR014012	Helicase/SANT-associated domain	PROSITE	PS51204	HSA	coord: 397..469 score: 13.946
IPR014978	Glutamine-Leucine-Glutamine, QLQ	SMART	SM00951	QLQ_2	coord: 190..226 e-value: 3.7E-11 score: 53.1
IPR014978	Glutamine-Leucine-Glutamine, QLQ	PFAM	PF08880	QLQ	coord: 191..223 e-value: 1.8E-9 score: 37.1
IPR014978	Glutamine-Leucine-Glutamine, QLQ	PROSITE	PS51666	QLQ	coord: 191..226 score: 19.615
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 649..937 e-value: 8.1E-72 score: 241.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 865..1068
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 600..863

Blast

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BLAST of TCONS_00064344-protein vs. Swiss-Prot (Human)
Match: SMCA2 (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2)

HSP 1 Score: 1041.57 bits (2692), Expect = 0.000e+0
Identity = 506/836 (60.53%), Postives = 647/836 (77.39%), Query Frame = 0

Query:  286 KSRFAPVTKPMGIDPVDIMKEREFRIQSRIVHRIDQLQNLPASITESLRTKALIELKALRLLNFQKQLRSEMVTSMRKDTTLETALNYRAYKRSKRQTLREARMTERLEKQQKLEVEKKKRAKHLEFINALLQHGREFREFHRSAQSRIQKTNKVIMGYHANFDREKRKEEERLERERLRMLMAEDEDGYRQLIDEKKNQRLHYLLSQTDEYITGLMMLVSQHKKEVDIKKRPKKSRRKTE-------------------DDDEEARHVPVE--NIETGVKLTGDDAPLSTELDQWLIENPGF-------------------------------KVMAEQDEEEDGEEDENEA-ESKKEGGDKEKKKEYEDDDAGTSMDSRNYYSLAHSTLEIIKEQPKSLVGGTLKEYQVKGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLVEKKKMNGPFLIILPLSTMSNWVLEFEKWAPSIIAISYKGSPTYRREAAQQIRMGRFNVVMTTYEYVMKDKAVLSKVKWKYMIVDEGHRMKNHNCKLTQTLNTHYLAPFRILLTGTPLQNRLPELWALMNFLLPSIFNSSSTFESWFNAPFAMTGEKIELNEEETLLIIRRLHKVLRPFLLRRLKKEVESQLPDKVEFIVKCDMSALQKIIYKHMQTKGILLTDGSEKDKDKKGKGGTKMLMNTIMQLRKICNHPFMFQHIEEAIAEHTGHANGVVSGRDIVRVSGKFDILDKMLSKLAVTGHKSLIFCQMTQCMTIMEDYLNWKQMPYLRLDGTTKADDRSDLLKIFNAKDSPYMVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1068
            +SR +P+ KP G+DPV+I++ERE+R+Q+RI HRI +L+NLP S+   LRTKA +ELKALRLLNFQ+QLR E+V  MR+DTTLETALN +AYKRSKRQTLREARMTE+LEKQQK+E E+K+R KH E++N++LQH ++F+E+HRS   +IQK +K +  +HAN +RE++KE ER+E+ER+R LMAEDE+GYR+LID+KK++RL YLL QTDEY+  L  LV +HK+    K++ K+ RRK +                   D+  +   +PV+  + ETG  L G +AP +++LD WL  NPG+                               K++ + + EE  E+D  +  E+ K+  D E   +Y      ++  S++YY++AH+  E +++Q   L+ GTLK YQ++GLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYL+E K++NGP+LII+PLST+SNW  EF+KWAPS++ ISYKG+P  RR    Q+R G+FNV++TTYEY++KDK +L+K++WKYMIVDEGHRMKNH+CKLTQ LNTHY+AP RILLTGTPLQN+LPELWAL+NFLLP+IF S STFE WFNAPFAMTGE+++LNEEET+LIIRRLHKVLRPFLLRRLKKEVESQLP+KVE+++KCDMSALQKI+Y+HMQ KGILLTDGSEKDK  KG   T  LMNTIMQLRKICNHP+MFQHIEE+ AEH G++NGV++G ++ R SGKF++LD++L KL  T H+ L+FCQMT  MTIMEDY  ++   YLRLDGTTK++DR+ LLK FN   S Y +FLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct:  325 QSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQY------SARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKT--LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152

The following BLAST results are available for this feature:

BLAST of TCONS_00064344-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064344-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMCA2	0.000e+0	60.53	Probable global transcription activator SNF2L2 OS=...	[more]

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TCONS_00064344-protein (polypeptide) - C. hemisphaerica