TCONS_00064312-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064312-protein
Unique NameTCONS_00064312-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064312-protein ID=TCONS_00064312-protein|Name=TCONS_00064312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp
MSLSLMPPNALVGLITFGKMVNVHELGCEGISKSYVFRGNKDITAKQLQD
MLGLGASSRTQQQTQQQGRGPMAPQQQEVHNRFLQPVHKCDMDLTDLLGE
LQTDPWPVPADRRPYRSTGAALSVAVSLLECCYPNTGARILMFVGGPCTQ
GPGMVIDHELKNVIRSYHDIETDNTPHMKKATRHYEALATRVANNGHTVD
IFACALDQVGLKEMKSCVNNTGGYMFMGDVFDSALFKQTFQRVFAKDAND
EFKTAYNASFEVKTSKELKVSGCVGNCVSLERKGGNISETEIGIGGTTAW
KVSALDPNTTYAIFFDVANQHTAPVPQGGRGCIQFITQYQHSSGQRRVRV
TTCARNWVDSSNLHYVAPSFDQEASAVLMARVATHRCETDDNAQDILRWL
DRMLIRCVQKVGEYNKDDPNSLRLAENFSLYPQFMFHLRRSQFLQYFNNS
PDETSFYRHWLNNEDVTNSLIMIQPILYSYSFHGPPEPVLLDSSSIQPDT
ILLLDTYFLVCIYYGEVRFVYFALQQDLTINKRKKKILLHIFLYSLQKIL
FISIC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040319XLOC_040319Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064312TCONS_00064312Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012990Sec23_24_beta_S
IPR006900Sec23/24_helical_dom
IPR029006ADF-H/Gelsolin-like_dom
IPR006896Sec23/24_trunk_dom
IPR002035VWF_A
IPR007123Gelsolin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030127COPII vesicle coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0030127 COPII vesicle coat
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012990Sec23/Sec24 beta-sandwichPFAMPF08033Sec23_BScoord: 255..358
e-value: 7.8E-35
score: 119.4
IPR006900Sec23/Sec24, helical domainPFAMPF04815Sec23_helicalcoord: 371..470
e-value: 2.0E-25
score: 88.5
IPR006900Sec23/Sec24, helical domainSUPERFAMILY81811Helical domain of Sec23/24coord: 371..474
IPR029006ADF-H/Gelsolin-like domainGENE3D3.40.20.10coord: 474..531
e-value: 2.0E-12
score: 46.8
NoneNo IPR availableGENE3D2.60.40.1670coord: 239..357
e-value: 5.4E-26
score: 91.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..75
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 263..370
IPR006896Sec23/Sec24, trunk domainPFAMPF04811Sec23_trunkcoord: 1..244
e-value: 4.3E-65
score: 219.6
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 1..238
e-value: 7.2E-66
score: 221.5
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 2..245
IPR007123Gelsolin-like domainSUPERFAMILY82754C-terminal, gelsolin-like domain of Sec23/24coord: 475..520

Blast
[Close]
BLAST of TCONS_00064312-protein vs. Swiss-Prot (Human)
Match: SC23A (Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2)

HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 344/518 (66.41%), Postives = 407/518 (78.57%), Query Frame = 0 
Query:    1 MSLSLMPPNALVGLITFGKMVNVHELGCEGISKSYVFRGNKDITAKQLQDMLGLGASSRTQQQTQQQGRGPMAPQQQEVHNRFLQPVHKCDMDLTDLLGELQTDPWPVPADRRPYRSTGAALSVAVSLLECCYPNTGARILMFVGGPCTQGPGMVIDHELKNVIRSYHDIETDNTPHMKKATRHYEALATRVANNGHTVDIFACALDQVGLKEMKSCVNNTGGYMFMGDVFDSALFKQTFQRVFAKDANDEFKTAYNASFEVKTSKELKVSGCVGNCVSLERKGGNISETEIGIGGTTAWKVSALDPNTTYAIFFDVANQHTAPVPQGGRGCIQFITQYQHSSGQRRVRVTTCARNWVDS-SNLHYVAPSFDQEASAVLMARVATHRCETDDNAQDILRWLDRMLIRCVQKVGEYNKDDPNSLRLAENFSLYPQFMFHLRRSQFLQYFNNSPDETSFYRHWLNNEDVTNSLIMIQPILYSYSFHGPPEPVLLDSSSIQPDTILLLDTYFLVCIYYGEV 517
            MSLSL+PP ALVGLITFG+MV VHELGCEGISKSYVFRG KD++AKQLQ+MLGL     TQ       RGP   QQ    NRFLQPV K DM+LTDLLGELQ DPWPVP  +RP RS+G ALS+AV LLEC +PNTGARI+MF+GGP TQGPGMV+  ELK  IRS+HDI+ DN  ++KK T+H+EALA R A  GH +DI+ACALDQ GL EMK C N TGGYM MGD F+++LFKQTFQRVF KD + +FK  +  + E+KTS+E+K+SG +G CVSL  KG  +SE EIG GGT  WK+  L P TT AI+F+V NQH AP+PQGGRG IQF+TQYQHSSGQRR+RVTT ARNW D+ + +  +A SFDQEA+A+LMAR+A +R ET++   D+LRWLDR LIR  QK GEY+KDDP+S R +E FSLYPQFMFHLRRS FLQ FNNSPDE+S+YRH    +D+T SLIMIQPILY+YSF GPPEPVLLDSSSI  D ILL+DT+F + IY+GE 
Sbjct:  153 MSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQAT-----RGPQV-QQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP-DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGET 663
The following BLAST results are available for this feature:
BLAST of TCONS_00064312-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC23A0.000e+066.41Protein transport protein Sec23A OS=Homo sapiens G... [more]
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