TCONS_00064301-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064301-protein
Unique Name	TCONS_00064301-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	458

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064301-protein ID=TCONS_00064301-protein|Name=TCONS_00064301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MNPGIHKEEVQKEKPVFTLKQIAEHKTEDDCWVAIDSSVYNITNWLSKHP
GGKSVLFNFAGTDCSDEFRIFHYNPNYKRLKAFRVGTLHPDDQRKDTAVS
KDLQELHARIKSEGAFLPDYWFYAGRAAIILSLFAVSAYLFNYTPSLWTC
AASGFFLGLAWQQLAFVGHDIGHHVVSHDHKIDDNLGIVFGNFLQGISLE
WWKHSHNTHHTVTNSVTHDPDIQHLPFLAVNKAFFKSIFSKYYYKTLNFD
KVSEFFIAKQHYLFYVVMGLARFNLYAQSFRHNLVGAGSTYTRKNIELVS
LFGFWVWLLTVLSLTPTWWHTAVFVLVSHAVAGIVHVQICINHFPMKVYE
GVPQKAFTNDGYLMSQLMTTRDIECPPFMDFFHGGLQFQIEHHIFPHLTR
SHLRRVQDELKKICKKHDLPFQNVPFWRANWDVIVKLYETSKELKISEIF
MDGINMNG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040316	XLOC_040316	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064301	TCONS_00064301	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001199	Cyt_B5-like_heme/steroid-bd
IPR012171	Fatty_acid_desaturase
IPR005804	FA_desaturase_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006629	lipid metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001199	Cytochrome b5-like heme/steroid binding domain	PRINTS	PR00363	CYTOCHROMEB5	coord: 49..63 score: 52.73 coord: 39..49 score: 43.11 coord: 76..88 score: 29.95
IPR001199	Cytochrome b5-like heme/steroid binding domain	SMART	SM01117	Cyt_b5_2	coord: 17..89 e-value: 1.9E-21 score: 87.3
IPR001199	Cytochrome b5-like heme/steroid binding domain	PFAM	PF00173	Cyt-b5	coord: 18..88 e-value: 2.9E-19 score: 68.9
IPR001199	Cytochrome b5-like heme/steroid binding domain	GENE3D	3.10.120.10		coord: 8..92 e-value: 2.9E-24 score: 84.3
IPR001199	Cytochrome b5-like heme/steroid binding domain	PROSITE	PS50255	CYTOCHROME_B5_2	coord: 14..89 score: 21.97
IPR001199	Cytochrome b5-like heme/steroid binding domain	SUPERFAMILY	55856	Cytochrome b5-like heme/steroid binding domain	coord: 11..97
IPR012171	Fatty acid desaturase	PIRSF	PIRSF015921	FA_sphingolip_des	coord: 1..449 e-value: 1.9E-128 score: 427.1
IPR005804	Fatty acid desaturase domain	PFAM	PF00487	FA_desaturase	coord: 147..422 e-value: 6.4E-29 score: 101.4
None	No IPR available	CDD	cd03506	Delta6-FADS-like	coord: 152..419 e-value: 3.65715E-57 score: 188.619

Blast

[Close]

BLAST of TCONS_00064301-protein vs. Swiss-Prot (Human)
Match: FADS2 (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.306e-43
Identity = 126/456 (27.63%), Postives = 211/456 (46.27%), Query Frame = 0

Query:    2 NPGIHKEEVQKEKPVFTLKQIAEHKTEDDCWVAIDSSVYNITNWLSKHPGGKSVLFNFAGTDCSDEFRIFHYNPNY--KRLKAFRVGTLHPD----DQRKDTAVSKDLQELHARIKSEGAFLPDYWFYAGRAAIILSLFAVSAYLFNYTPSLWT-CAASGFFLGLAWQQLAFVGHDIGHHVVSHDHKIDDNLGIVFGNFLQGISLEWWKHSHNTHHTVTNSVTHDPDIQHLPFLAVNKAFFKSI-FSKYYYKTLNFDKVSEFF-------IAKQHYLFYVVMGLARFNLYAQSFRHNLVGAGSTYTRKNIELVSLFGFWVWLLTVLSLTPTWWHTAVFVLVSHAVAGIVHVQICINHFPMKVYEGVPQKAFTNDGYLMSQLMTTRDIECPPFMDFFHGGLQFQIEHHIFPHLTRSHLRRVQDELKKICKKHDLPFQNVPFWRANWDVIVKLYETSK 442
            N G    E +   P F+ ++I +H    D W+ ID  VYNIT W  +HPGG+ V+ ++AG D +D FR FH +  +  K LK   +G L P+    D  K++ +++D + L    +    F  ++ F+    A I++L +++ +   Y  + W     + F L  +  Q  ++ HD GH  V    K +  +       L+G S  WW H H  HH   N    DPD+  L    + +  ++ I + K   K L ++   E+F       +   ++ + ++M +     +      +L  A S Y R  I  +  +G    LL +           +  L SH    +      +NH  M+    + Q+A+ +  +  SQL  T ++E   F D+F G L FQIEHH+FP + R +L ++   +K +C KH + +Q  P  RA  D+I  L ++ K
Sbjct:    6 NQGEGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNMLHVFVLGE--WQPIEYGKKKLKYLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWV-----DLAWAVSYYIRFFITYIPFYGILGALLFL---------NFIRFLESHWFVWVTQ----MNHIVME----IDQEAYRD--WFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGK 435

The following BLAST results are available for this feature:

BLAST of TCONS_00064301-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064301-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FADS2	1.306e-43	27.63	Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 P...	[more]

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TCONS_00064301-protein (polypeptide) - C. hemisphaerica