TCONS_00063945-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063945-protein
Unique NameTCONS_00063945-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063945-protein ID=TCONS_00063945-protein|Name=TCONS_00063945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MGFKFLEVLKPFISVLPEVSKPERKIQFREKVLWTAITLFIFLVCCQIPL
FGIMSSDSADPFYWLRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKIL
EVGDTPRDRALFNGAQKLFGMIITIGQAIVYVMTGMYGEPSDLGAGVCLL
IIIQLFCAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPAT
VNTGRGTEFEGAVIALFHLLATRTDKVRGLREAFYRQNLPNLMNLLATIF
VFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
VYIISQMLSSKFAGNFFVSLLGVWNEAGGASRSYPIGGLCYYLSPPESLG
NIVEDPIHAFMYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKDQQMVMR
GHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVT
IIYQYFEIFVKEQSEQGGMGTLLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040077XLOC_040077Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063945TCONS_00063945Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019561Translocon_Sec61/SecY_plug_dom
IPR002208SecY/SEC61-alpha
IPR030659SecY_CS
IPR023201SecY_su_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019561Translocon Sec61/SecY, plug domainPFAMPF10559Plug_transloconcoord: 40..74
e-value: 3.0E-18
score: 65.3
IPR002208SecY/SEC61-alpha familyPFAMPF00344SecYcoord: 75..455
e-value: 4.6E-77
score: 259.2
IPR002208SecY/SEC61-alpha familyTIGRFAMTIGR00967TIGR00967coord: 29..464
e-value: 1.5E-121
score: 404.2
IPR002208SecY/SEC61-alpha familyPIRSFPIRSF004557SecY_Sec61alphacoord: 6..467
e-value: 9.5E-98
score: 325.6
NoneNo IPR availableGENE3D1.10.3370.10coord: 28..471
e-value: 2.3E-151
score: 503.8
IPR030659SecY conserved sitePROSITEPS00755SECY_1coord: 75..94
IPR030659SecY conserved sitePROSITEPS00756SECY_2coord: 164..182
IPR023201SecY subunit domainSUPERFAMILY103491Preprotein translocase SecY subunitcoord: 8..462

Blast
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BLAST of TCONS_00063945-protein vs. Swiss-Prot (Human)
Match: S61A2 (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 854.358 bits (2206), Expect = 0.000e+0
Identity = 420/476 (88.24%), Postives = 453/476 (95.17%), Query Frame = 0 
Query:    1 MGFKFLEVLKPFISVLPEVSKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWLRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKILEVGDTPRDRALFNGAQKLFGMIITIGQAIVYVMTGMYGEPSDLGAGVCLLIIIQLFCAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRTDKVRGLREAFYRQNLPNLMNLLATIFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNVYIISQMLSSKFAGNFFVSLLGVWNE--AGGASRSYPIGGLCYYLSPPESLGNIVEDPIHAFMYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKDQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEQGGMGTLLF 474
            MG KFLEV+KPF +VLPE+ KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVI+ASNRGTLMELGISPIVTSGLIMQLLAGAKI+EVGDTP+DRALFNGAQKLFGMIITIGQAIVYVMTGMYG+P+++GAG+CLLIIIQLF AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP T+NTGRGTEFEGAVIALFHLLATRTDKVR LREAFYRQNLPNLMNL+AT+FVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN+Y+ISQMLS +F+GNF V+LLG W +   GG +RSYP+GGLCYYLSPPES+G I EDP+H  +YI FMLGSCAFFSKTWI+VSGSSAKDVAKQLK+QQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADF+GAIGSGTGILLAVTIIYQYFEIFVKEQ+E GGMG L F
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
The following BLAST results are available for this feature:
BLAST of TCONS_00063945-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S61A20.000e+088.24Protein transport protein Sec61 subunit alpha isof... [more]
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