TCONS_00063888-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063888-protein
Unique NameTCONS_00063888-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063888-protein ID=TCONS_00063888-protein|Name=TCONS_00063888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MVLFEMDGQKNNECRDFLRGVCNRGSSCKFFHPPDANIIKKENKLPICKD
FQNKGCERKMCKFLHISQQEEEEYNASGILPAHGGRPDKVRSLGIPGGRG
GGPRPMHPPASDACKDFMNGVCNRGNRCKFSHINEESPNYGKRRRNDFGG
PGEYMGGGQGQGHLAEDNEMLRRKISDLQRQVIDLRQMNDTLYEQNSKYR
LQLRGGPGIAPPPATGQGANPTYGSGSFAGPAATGGGNQYSSFDGYSKF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040052XLOC_040052Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063888TCONS_00063888Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..195
NoneNo IPR availableGENE3D1.20.5.1000coord: 146..204
e-value: 8.5E-4
score: 18.8
NoneNo IPR availablePFAMPF14608zf-CCCH_2coord: 47..65
e-value: 2.6
score: 8.6
NoneNo IPR availableGENE3D4.10.1000.10coord: 83..139
e-value: 1.8E-7
score: 30.3
NoneNo IPR availableGENE3D4.10.1000.10coord: 5..72
e-value: 7.4E-12
score: 44.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..249
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 10..34
e-value: 7.4E-4
score: 28.8
coord: 42..67
e-value: 0.53
score: 18.5
coord: 108..134
e-value: 5.6E-4
score: 29.2
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 113..132
e-value: 1.5E-6
score: 27.9
coord: 12..34
e-value: 3.5E-6
score: 26.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 8..35
score: 14.906
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 108..135
score: 14.643
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 42..68
score: 10.897
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 9..35
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 111..136

Blast
[Close]
BLAST of TCONS_00063888-protein vs. Swiss-Prot (Human)
Match: ZC3HA (Zinc finger CCCH domain-containing protein 10 OS=Homo sapiens GN=ZC3H10 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.163e-27
Identity = 82/271 (30.26%), Postives = 119/271 (43.91%), Query Frame = 0 
Query:   14 CRDFLRGVCNRGSSCKFFHP---PDANIIKKENKLPICKDFQNKGCERKMCKFLHISQQEEEEYNASGILPAHGGRPDKVRSLG-----IPGGRGGGPRPMHPPASDACKDFMNGVCNRGNRCKFSHINEESPNYGKR----------------RRNDF---------------GGPGEYMGG--------------------GQGQGHLAEDNEMLRRKISDLQRQVIDLRQMNDTLYEQNSKYRLQLRGGPGIAPPPATGQGANPTYGS 225
            CRDFLR VC RG  C++ HP     +N+   +N+   C DFQNK C R  C+F+H S+++E+ Y  +G LP    R      LG     +P G+   P          C+DF+ G C RG +CKF H+  +   +  R                RR+D                 GP    GG                    G     L E+N MLR+++ +L++QV +L   N+ L EQN+++R Q +     +  PAT Q   PT G+
Sbjct:   42 CRDFLRNVCKRGKRCRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSKEDEDGYKKTGELPPR-LRQKVAAGLGLSPADLPNGKEEVP---------ICRDFLKGDCQRGAKCKFRHLQRDF-EFDARGGGGTGGGSTGSVLPGRRHDLYDIYDLPDRGFEDHEPGPKRRRGGCCPPDGPHFESYEYSLAPPRGVECRLLEEENAMLRKRVEELKKQVSNLLATNEVLLEQNAQFRNQAKVITLSSTAPATEQTLAPTVGT 301
The following BLAST results are available for this feature:
BLAST of TCONS_00063888-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZC3HA1.163e-2730.26Zinc finger CCCH domain-containing protein 10 OS=H... [more]
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