TCONS_00063507-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063507-protein
Unique Name	TCONS_00063507-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	208

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063507-protein ID=TCONS_00063507-protein|Name=TCONS_00063507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MEDSPKREIKQGRRAGNLFQTAGSNASTNESNNNAIKTEASSSLSPKPAR
KQGGWADDIKEKKRGDEGSDNEQDDEGKFGRMLEEEDERLKQDATVVLDN
DGDDIPIIPELDDVTEDDMASQVAAPPSVLVTRIATYKELDHDFEKHTGL
LTLDGDIDLKLLGNVLAPESEIQEADKAWNWDRVFTEVSSELRSEWEQTK
SLTSSNKD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039811	XLOC_039811	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063507	TCONS_00063507	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029302	IFT43

Vocabulary: **Cellular Component**
Term	Definition
GO:0030991	intraciliary transport particle A

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0030991	intraciliary transport particle A

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029302	Intraflagellar transport protein 43	PFAM	PF15305	IFT43	coord: 71..198 e-value: 3.4E-40 score: 137.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..113

Blast

[Close]

BLAST of TCONS_00063507-protein vs. Swiss-Prot (Human)
Match: IFT43 (Intraflagellar transport protein 43 homolog OS=Homo sapiens GN=IFT43 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 2.180e-40
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = 0

Query:   10 KQGRRAGNLFQTAGSNASTNESNNNAIKTEASSSLSPKPARKQGGWA-DDIKEKKRGDEGSDNEQDDEGKFGRMLEEEDERLKQDATVVLDNDGDDIPIIPELDDVTEDDMASQVAAPPSVLVTRIATYKELDHDFEKHTGLLTLDGDIDLKLLGNVLAPESEIQEADKAWNWDRVFTEVSSELRSEWE 197
            K GRRA    ++A +    N  N++   T  +SS +  P  +QGGWA D +K  K   + S+             E ED RL+  +    D  GD IPIIP+L++V E+D   QVAAPPS+ + R+ TY++LD+D  K++ + TLDG+IDLKLL  VLAPE E++E D  W+WD +FTEVSSE+ +EW+
Sbjct:   21 KMGRRAQQ--ESAQAENHLNGKNSSLTLTGETSS-AKLPRCRQGGWAGDSVKASKFRRKASE-------------EIEDFRLRPQSLNGSDYGGD-IPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWD 192

The following BLAST results are available for this feature:

BLAST of TCONS_00063507-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063507-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IFT43	2.180e-40	43.39	Intraflagellar transport protein 43 homolog OS=Hom...	[more]

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TCONS_00063507-protein (polypeptide) - C. hemisphaerica