TCONS_00062882-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062882-protein
Unique Name	TCONS_00062882-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	646

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062882-protein ID=TCONS_00062882-protein|Name=TCONS_00062882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=646bp
LLVRGSSVEQSMVKTKSVYEKMAMKSVNISVERLLEQEVEVIGRDGEEKY
IKPFDFSEELTYLAGKIDFYEGIDGHTAAEEEENEEEEESLEEGAKKEND
SKQENEWPWSSVHSKLRLALTEMCVMLDVLQTLNKRKYFILAPIQQNPEL
EKQTVQMLEKRKYLAKVGSYIGTGAAGLGMQRHVKPEPIIIDSDPTQEKE
IEYYTQLMELRQFWRVKKSGNQITGDLSYRTSGSRFWHPGIFEVKAESDE
AETEEEEKEEKKLAITLSPDLVKSSHIIVQLIDKESRCGWKAVSHPIILE
DNFVNSWEKEMTKAQQHLFNKEIFSQLSNDAFQGSFLGINVLNSQIRCTM
SDNAEVIITHNVDSATTDDLQTETKETSNDLALLLSALLYQQHRNVSKFS
TPYPATSNFYGKQSKSSSVINIIHRKPNDLGKSILYEFMKQAEHKLWIHR
INEFLYNQNVRFPEPSIGFHWNVLKSRLKSMLTVTLSTVHRHKSISSNFA
ITVDETGFHISSRNMISVDLPFDMDMLALVLSNNVYKHLQSVVQDVSRQH
GWIMITPKMGNNILSSNQVQARPPLLLRNDTNEKFVQIYLNDMRNIEVEI
SKERQGNDITLDDGFKLLNKEKLSVSWALLPGDSFMEKCEFLFLFL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039389	XLOC_039389	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062882	TCONS_00062882	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019313	Mediator_Med17

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..98
None	No IPR available	COILS	Coil	Coil	coord: 241..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..106
IPR019313	Mediator complex, subunit Med17	PFAM	PF10156	Med17	coord: 198..423 e-value: 8.7E-6 score: 24.6

Blast

[Close]

BLAST of TCONS_00062882-protein vs. Swiss-Prot (Human)
Match: MED17 (Mediator of RNA polymerase II transcription subunit 17 OS=Homo sapiens GN=MED17 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.902e-50
Identity = 150/559 (26.83%), Postives = 264/559 (47.23%), Query Frame = 0

Query:   23 AMKSVNISVERLLEQEVEVIGRDGEEKYIKPFDFSEELTYLAGKIDFYEGIDGHTAAEEEENEEEEESLEEGAKKENDSK------QENEWPWSSVHSKLRLALTEMCVMLDVLQTLNKRKYFILAPIQQN---PELEKQTVQMLEKRKYLAKVGSYIGTGAAGLGMQRHVKPEPIIIDSDPTQEKEIEYYTQLMELRQFWRVKKSGNQITGDLSYRTSGSRFWHPGIFEVKAESDEAETEEEEKEEKKLAITLSPDLVKSSHIIVQLIDKESRCG----WKAVSHPIILEDNFVNSWEKEMTKAQQHLFNKEIFSQLSNDAFQ-GSFLGINVLNSQI--RCTMSDNAEVIITHNVDSATTDDLQTETKETSNDLALL---LSALLYQQHR-NVSKFSTPYPATSNFYGKQSKSSSVINIIHRKPNDLGKS--ILYEFMKQAEHKLWIHRINEFLYNQNVRFPEPSIGFHWNVLKSRLKSMLTVTLSTVHRH---KSISSNFAITVDETGFHISSRNMISVDLPFDMDMLALVLSNNVYKHLQSVVQDVSRQHGWIMIT 556
             +++V IS+E   E++V  +G DG E Y+ P   S+ L  LA +IDF +G             + +E    G+  + D +      Q + WPW SV + LR ALTEMCV+ DVL  +  +K+  L P+ Q+   P+   QT+Q++ K+K LA     +  GA  L            +  +   + + ++ ++L+ LRQ W+++K G++I GDLSYR++GS F H G FEV   +D    ++  ++   L + +  DL  S++I V +  +    G          P+         W+ ++  AQ  L  KEIF+QLS +A Q  S +   V+ +QI  +   S    + + H+ +   +    TE +   + L +L   L  L+ + H+  +S    P+PA++ F  K+ + S        + N L  S  +L + +KQA+H     R    + +   R  +P I  HW+ +    +S + V +++       KSI     I V++    +  R+   + L +    L   L + + +H    VQ +++  GW +++
Sbjct:    3 GVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEAAGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKS---------VTENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQNVLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATEKQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLITSQGYEQICKSIQLQLNIGVEQ--IRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLS 550

The following BLAST results are available for this feature:

BLAST of TCONS_00062882-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062882-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MED17	2.902e-50	26.83	Mediator of RNA polymerase II transcription subuni...	[more]

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TCONS_00062882-protein (polypeptide) - C. hemisphaerica