TCONS_00062725-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062725-protein
Unique NameTCONS_00062725-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062725-protein ID=TCONS_00062725-protein|Name=TCONS_00062725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp
DNNRESEYRRSLASSSTSSSRDDRHHRDDHSRSGNVAGTTSSTSKFDLIQ
PSPTVIIQSLHLEAQEKDIEAILKEDGFVARNVSVIRERNSESRGFAFVD
FDNENMARDWIIKRQQKLVILGQRSVLNYSRNKKQQQPNQQQPTHVADWT
CNKCNGLNFGSRHKFGEPFVCFKCNTIRDESDVQRQDQHQQNKDSSVCAN
PCNVLMIRGMDFSTEEEKIRMEVVKLTSKVLYDVRLIRDKITDMSRGFAF
IELGTTEDAQELMEVIERMDPPFEIDGRRITVGYARNGYNAPLGGKKTST
GVVSKETAAQNALAQATAANPNSTPLEYSSHNVTGALQNPSSTGPTDGSS
ASTTALAIQGFTYDAASGYYYDSNTGLYYDSSTGYYYNSTTEQWLQWDGT
QYHVINQDGSLAGQPSQQKQQQQHAIKQPPPPSTPNPAAAHQTQQQQQQH
YTQQNQYSQQLQPQQLSKSISTPAQNALMIASDQHQKNQLQAGTPGQQAS
GESVQLGFQKPKSARKIAKDMERWAKKLNTQTETKKAAVKQAQQELRMLE
QKEEELRKKIQIGSSLTESLATVAKAKDGIRSLFVPDNDEEGSVLKLGSA
LQSNNQKPRSSLVADYPDDDFDNDNDVIDESQFVDLSKMACLLCQRQLTS
QENLTKHLTMSQLHKQNLEKYKRSKKNKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039298XLOC_039298Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062725TCONS_00062725Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 525..562
NoneNo IPR availableGENE3D3.30.70.330coord: 49..138
e-value: 1.3E-10
score: 40.8
NoneNo IPR availableGENE3D4.10.1060.10coord: 139..188
e-value: 2.8E-5
score: 22.9
NoneNo IPR availableGENE3D3.30.70.330coord: 189..320
e-value: 4.2E-13
score: 48.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..506
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..470
NoneNo IPR availableCDDcd12313RRM1_RRM2_RBM5_likecoord: 201..285
e-value: 1.19552E-31
score: 117.655
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 54..128
e-value: 7.9E-4
score: 28.7
coord: 204..283
e-value: 8.2E-8
score: 42.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 55..111
e-value: 1.2E-6
score: 28.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 53..132
score: 10.019
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 203..287
score: 12.032
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 44..141
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 193..291

Blast
[Close]
BLAST of TCONS_00062725-protein vs. Swiss-Prot (Human)
Match: RBM10 (RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.386e-45
Identity = 190/712 (26.69%), Postives = 300/712 (42.13%), Query Frame = 0 
Query:   55 VIIQSLHLEAQEKDIEAILKEDGFVARNVSVIRERNS-ESRGFAFVDFDNENMARDWIIKRQQKLVILGQRSVLNYSRNKKQQQPNQQQPTHVADWTCNKCNGLNFGSRHKFGEPFVCFKCNTIRDESDVQ-----RQDQH--------------------------------QQNKDSSVCANPCNVLMIRGMDFSTEEEKIRMEVVKLTSKVLYDVRLIRDKITDMSRGFAFIELGTTEDAQELMEVIERMDPPFEIDGRRITVGYARNGYN--APLGGKKTSTGVVSKE--TAAQNALAQA------TAANPNSTPLEYSSH----------------------------NVTGALQNPSSTGPTDGSSASTTALAIQGFTY---DAASGYYYDSNTGLYYDSSTGYYYNSTTEQWLQWDGTQYHVINQDGSLAGQPSQQKQQQQHAIKQPPPPSTP----NPAAAHQTQQQQQQHYTQQNQYSQQLQPQQL-----SKSISTPAQNALMIASDQHQKNQLQAGTPGQQASGESVQLGFQKPKSARKIAKDMERWAKKLNTQTETKKAAVKQAQQELRMLEQKEEELRKKIQIGSSLTESLATVAKAKDGIRSLFVPDNDEEGSVLKLGSALQSNNQKPRSSLVADYP-DDDFDNDNDVID---ESQFVDLSKMACLLCQRQLTSQENLTKHLTMSQLHKQNLEKYKRS 674
            V+++ L   A E DI   L+  G  AR V ++R ++S +SRGFAFV+F +   A  W+   Q  L ILGQ+  ++YS  K         P    DW CNKC   NF  R K      CFKC   + E++ +     R DQ                                 Q ++ SS  AN  + +++R ++  +  + I   +         +VR+I+DK T ++RGFAFI+L T  +A +L+++++ + PP  IDG+ I V +A+      A   G + S   V+     AAQ A++QA      T A     P++YS +                             +TG   +P+  GP         ++++Q F+     AA G Y  S       SS G   NS +   +     +  + +     +  P       Q +  Q P P       +  + +    Q   +Y   +QY    Q QQ       +    P   AL  ++D H+    + G P ++   +  +    K K+A++IAKDMERWA+ LN Q E      K + Q +  L   E         G ++ E    +A+ +    S+ +P         KL S    +   P   LVA Y  + D + + +      E +  D  K+ACLLC+RQ  S+E L +H  +S LHKQNLE ++R+
Sbjct:  131 VMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK---------PKINEDWLCNKCGVQNFKRREK------CFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAN--DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEA---SSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVP---ALEQSADGHK----ETGAPSKEGKEKKEK---HKTKTAQQIAKDMERWARSLNKQKEN----FKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQH--TSMDLP---------KLAS---DDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRA 794
The following BLAST results are available for this feature:
BLAST of TCONS_00062725-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM101.386e-4526.69RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE... [more]
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