TCONS_00062672-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062672-protein
Unique Name	TCONS_00062672-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	406

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062672-protein ID=TCONS_00062672-protein|Name=TCONS_00062672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MYRANNPNAPSYRSNMNGDSFTHVSYRRNPGYFERVGSSMCGTIFGFILL
VVAFPVLFYNEGRAVQTAKSLDEGLKQVNTLSPSNQIFGSNEGKLVHLTD
RLKSSKALVDNDFGINIYYIALKRRVEMYQWVEHENKREYNEGDRTRVET
SYSYTKEWKEEMMKSSGFSQSTLYRNPGSKPLESQTIRSSLVHVAEFQLS
QNLINKVSSFHPYKLTNVPHPFKTVGEFVYKSQDPYNPEVGDLRISFEVA
GQSHPSDQSQQDIVSIVAKQRGSSLTSYQTKAGDSLEMLYDGEKSAQEIF
EAEHSFNTKLTWGIRFVGWLLMFISFQIITDVLRQIVSFIPIIREIVTLA
TTIIAFSMASSLTLVTVAIAWFYYRPLLSVTLICMAAIPLFLSRQKAASE
KQTSKD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039283	XLOC_039283	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062672	TCONS_00062672	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012430	TMEM43_fam

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012430	Transmembrane protein 43 family	PFAM	PF07787	TMEM43	coord: 128..376 e-value: 2.1E-72 score: 243.4

Blast

[Close]

BLAST of TCONS_00062672-protein vs. Swiss-Prot (Human)
Match: TMM43 (Transmembrane protein 43 OS=Homo sapiens GN=TMEM43 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 6.143e-100
Identity = 147/397 (37.03%), Postives = 235/397 (59.19%), Query Frame = 0

Query:    9 APSYRSNMNGDSFTHVSYRRNPGYFERVGSSMCGTIFGFILLVVAFPVLFYNEGRAVQTAKSLDEGLKQVNTLSPSNQIFGSNEGKLVHLTDRLKSSKALVDNDFGINIYYIALKRRVEMYQWVEHENKREYNEGDRTRVETSYSYTKEWKEEMMKSSGFSQSTLYRNPGSKPLESQTIRSSLVHVAEFQLSQNLINKVSSFHPYKLTNVPHPFKTV---GEFVYKSQDPYNPEVGDLRISFEVAGQSHPS-DQSQQDIVSIVAKQRGSSLTSYQTKAGDSLEMLYDGEKSAQEIFEAEHSFNTKLTWGIRFVGWLLMFISFQIITDVLRQIVSFIPIIREIVTLATTIIAFSMASSLTLVTVAIAWFYYRPLLSVTLICMAAIPLFLSRQKAASEK 401
            A +Y S         V     PG+ ER+  +  G   G +  +++F ++F NEGRA++TA SL EGL  V +    + +   NEG+LVH+   L++SK L D ++G+++  + L+R VEMYQWVE E  REY E  + + ET YSY  EW+ E++ S  F +   ++NP +  +ES    +  V +  F LS  LI+KV +F    L+ +  P   +   G+F Y S++P  PEVGDLR+SF  AG S    D     +V+++A+QRG  L  + TK+GD+L +L+ G+ SA+E+F  E   N+  TWG+R  GW+ MF+   ++T +L  +V + P+ R++V +     AF +A+SLTL+TVA  W +YRPL ++ +  +A +P+ ++R +  ++K
Sbjct:    2 AANYSSTSTRREHVKVKTSSQPGFLERLSETSGGMFVGLMAFLLSFYLIFTNEGRALKTATSLAEGLSLVVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESREYTEDGQVKKETRYSYNTEWRSEIINSKNFDREIGHKNPSAMAVESFMATAPFVQIGRFFLSSGLIDKVDNFKSLSLSKLEDPHVDIIRRGDFFYHSENPKYPEVGDLRVSFSYAGLSGDDPDLGPAHVVTVIARQRGDQLVPFSTKSGDTLLLLHHGDFSAEEVFHRELRSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKAFAFCVATSLTLLTVAAGWLFYRPLWALLIAGLALVPILVARTRVPAKK 398

The following BLAST results are available for this feature:

BLAST of TCONS_00062672-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062672-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMM43	6.143e-100	37.03	Transmembrane protein 43 OS=Homo sapiens GN=TMEM43...	[more]

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TCONS_00062672-protein (polypeptide) - C. hemisphaerica