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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00062632-protein ID=TCONS_00062632-protein|Name=TCONS_00062632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MSVKIESYSCIMSNEDSKENLLSLHLHHFARKNRPLSPFISKLRFLLNCT
KHQDAIHWSSDGRAIVITNVEVFKQSVLDNEAEMFKTKNFTSFVRQLNLY
GFRKVPSNGKSDPATNMKFEHTNFRRERPDLMQYIQRTCVVGGKRKGELL
TTFSPETRPLAMKKATPILYIKHDNKENIFQHQIQSGLNAGSIVGKPLGL
SILKAVSTNIPGSSNVSLINNQHFAINVKPNIRTVFAPSKNVLSTDTKII
SFSQIIEQNVKSSPPVPRTSSPQQTHQPMVADPTTENLHISDNPPNTTNN
DSTTEPILYSVTDLPNTSSEHDYALPTTPDKFPIVPDEKPAIHPTNTSSP
KSPPMITDQDIYQFLNENFSAEKEVVQSLLSLPESQPDQIFDDLKTLAEV
SSNPLLGVDNVIKLQSGNATPRETVVSVNHI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000232 | Heat shock factor (HSF)-type, DNA-binding | PRINTS | PR00056 | HSFDOMAIN | coord: 39..62
score: 28.57
coord: 93..105
score: 83.74 |
| IPR000232 | Heat shock factor (HSF)-type, DNA-binding | SMART | SM00415 | hsfneu3 | coord: 35..138
e-value: 9.9E-18
score: 74.9 |
| IPR000232 | Heat shock factor (HSF)-type, DNA-binding | PFAM | PF00447 | HSF_DNA-bind | coord: 39..137
e-value: 1.1E-23
score: 83.5 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 33..138
e-value: 5.0E-27
score: 93.7 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | SUPERFAMILY | 46785 | "Winged helix" DNA-binding domain | coord: 36..137 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 260..304 |
Blast
The following BLAST results are available for this feature:
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