TCONS_00061872-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061872-protein
Unique Name	TCONS_00061872-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	847

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061872-protein ID=TCONS_00061872-protein|Name=TCONS_00061872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=847bp
MREGPSNATIDWNPLGEVYYRKVEVYSMLWKDRVDLNKYVAAGGTYGGPI
ALVKKDAASGATNQKPVIYIFTAAGQEQAAFKWDGGKLIQMGWSSSEELI
CVSEDGAVFMYDMFGSYIKQFSFGNEVQRSYVLRAEVFASHFGTGVCVLS
GDYQFFVINNVNDVKVKRLQNPFQMDAPPSCWTVICAAEETEAKVLMAID
QSINELDSFQHKPKNPPISQAINSFIDIVVSFNQKYVAIFADTGLLWIGS
SSLNEVYCEFNTHLSTRPAQLVWCGSGAVVGYWDNYLMMVGPTSDTVKYF
VDNKVHLVQELDGVRIIGNYYQEFLQKVPAEVEDVFKLGSMKSSAMLLDA
SKEYHSYSPRVDDYLRAVKDHLHEAVTDCLRAAGHLFDEKEQRELMRAAS
FGKSFVQDMRPQAFVEMAHTIRILNNIRNFKIGIPITYDQLQRLTLPVLI
DRLIARRFFFLAVKICNYMKIPKKEGVSRVLAHWACYKVQQDTVDENQLA
REIHNKLRDTPGISFTEIATKAYNRGKSALAIELLDYEPRSAEQVPLLMK
MGKTELALQKAIESGETELIYSVTTYMRDHLPSTEFLMKIRLYPVAASLL
MKICKTQDRSFLINLCYQDDKYQNLGALYIQESFVEKNLDSRIKGLDKAR
IEFGKAQDPFKAQVTEDNIKLLEFQSRLQDQFGDQYLNKTIGDTLYQLIH
KGYYKKADQLKKEFAIPDVRFWWTKIQALGASHAWKELEIFSKSKKSPIG
YEPFVEACHKFGNNKVEAEKYMSKVPLDKKVQLFLKIGYYDEAAEAAFQS
RSHDDLNLVASKASNNRSVQEKINIYRTQLSQGVPAFSLKGKGFSLS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038806	XLOC_038806	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061872	TCONS_00061872	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006926	Vps16_N
IPR006925	Vps16_C
IPR015943	WD40/YVTN_repeat-like_dom
IPR016534	VPS16
IPR017986	WD40_repeat_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0007033	vacuole organization

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006926	Vps16, N-terminal	PFAM	PF04841	Vps16_N	coord: 9..415 e-value: 6.6E-105 score: 351.1
IPR006925	Vps16, C-terminal	PFAM	PF04840	Vps16_C	coord: 513..816 e-value: 1.4E-84 score: 283.8
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 10..312 e-value: 1.5E-4 score: 20.2
IPR016534	Vacuolar protein sorting-associated protein 16	PIRSF	PIRSF007949	Vps16	coord: 4..833 e-value: 2.5E-252 score: 837.7
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 217..289 coord: 67..177

Blast

[Close]

BLAST of TCONS_00061872-protein vs. Swiss-Prot (Human)
Match: VPS16 (Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2)

HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 363/834 (43.53%), Postives = 550/834 (65.95%), Query Frame = 0

Query:    9 TIDWNPLGE-VYYRKVEVYSMLWKDRVDLNKYVAAGGTYGGPIALVKKD-AASGATNQKPVIYIFTAAGQEQAAFKWDGGKLIQMGWSSSEELICVSEDGAVFMYDMFGSYIKQFSFGNEVQRSYVLRAEVFASHFGTGVCVLSGDYQFFVINNVNDVKVKRLQNPFQMDAPPSCWTVICAAEETEAKVLMAIDQSINELDSFQHKPKNPP-ISQAINSFIDIVVSFNQKYVAIFADTGLLWIGSSSLNEVYCEFNTHLSTRPAQLVWCG-----SGAVVGYWDNYLMMVGPTSDTVKYFVDNKVHLVQELDGVRIIGNYYQEFLQKVPAEVEDVFKLGSMKSSAMLLDASKEYHSYSPRVDDYLRAVKD--HLHEAVTDCLRAAGHLFDEKEQRELMRAASFGKSFVQDMRPQAFVEMAHTIRILNNIRNFKIGIPITYDQLQRLTLPVLIDRLIARRFFFLAVKICNYMKIPKKEGVSRVLAHWACYKVQQDTVDENQLAREIHNKLRDTPGISFTEIATKAYNRGKSALAIELLDYEPRSAEQVPLLMKMGKTELALQKAIESGETELIYSVTTYMRDHLPSTEFLMKIRLYPVAASLLMKICKTQDRSFLINLCYQDDKYQNLGALYIQESF-VEKNLDSRIKGLDKARIEFGKAQDPFKAQVTEDNIKLLEFQSRLQDQFGDQYLNKTIGDTLYQLIHKGYYKKADQLKKEFAIPDVRFWWTKIQALGASHAWKELEIFSKSKKSPIGYEPFVEACHKFGNNKVEAEKYMSKVPLDKKVQLFLKIGYYDEAAEAAFQSRSHDDLNLVASKAS--NNRSVQEKINIYRTQ 829
            T +WNPLG+  +YRK E+YSM W  + +L   + A   YGGPIAL++       A + +PV+ I++A+G   A+  W  G ++ +GWS+ EEL+CV EDGAV +Y + G + + FS GNEV ++ VL A +F + FG+GV +L+G ++F +  NV D+K++R+     + + PSCWTV+C  ++  A +L+A+   +  LD        PP ++  ++SF+ + VSF  +++A+F DTG +W+G++SL E  CEFN ++   P Q+VWC        AVV  W+  LM+VG   +++++ +D   +LV ELDGVRI      EFL +VPA  E++FK+ SM   A+LL+A KEY   S + D+YLR +++   L +AV  C+ AAGH      Q+ L+RAASFGK F+    P +FV M   +R+LN +R++ IGIP+TY Q ++LT+ VL+DRL+ RR + LA++IC Y+++P+ +GVSR+LAHWACYKVQQ  V +  +AR I+ KL DTPG+S+++IA +AY  G++ LAI+LL+YEPRS EQVPLL+KM +++LAL KAIESG+T+L+++V  ++++ L   +F M +R  P+A SL  + CK Q+   L +L  QDD +Q LG+ +I+ S+  E+ ++ R+  L  A   F KA++ F A+ TED ++LL  Q RL+D+ G Q+L+ ++ DT+  LI  G+ K+A+QL ++F IPD R WW K+ AL     W+ELE FSKSKKSPIGY PFVE C K  +NK EA+KY S+V  ++KV+  L +G   +AA+ A + R+  +L+LV S  +   + +  +KI   R Q
Sbjct:    5 TANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAASVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFSMGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCWTVLC--QDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLTQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMK-QHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNEAELSLVLSHCTGATDGATADKIQRARAQ 835

The following BLAST results are available for this feature:

BLAST of TCONS_00061872-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061872-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VPS16	0.000e+0	43.53	Vacuolar protein sorting-associated protein 16 hom...	[more]

You are here

TCONS_00061872-protein (polypeptide) - C. hemisphaerica