TCONS_00061282-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061282-protein
Unique NameTCONS_00061282-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061282-protein ID=TCONS_00061282-protein|Name=TCONS_00061282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MSSFSTSHLEKRVKALTMSQQSIQTLSLWCIHHRKSAKIIVKHWLKDLLK
AKVKKKLALMYLANDVLQNSRKKGTEFNQEFRIVMLGAVNHCIHTADDKL
ANALKRMHGIWTERNVFEEDFLSTIQQAIGGGEKQDASTTPPLDQMPIDE
SEFMMTTTDELATATTVAPIHPPDHPPDPDELVLRLQELEHSATQDAVVR
EQIANLPTEVTDPTYIDKVEDLESARRLQEKINSACELLQEYNTRLSVEQ
VDREQTRKMLLDYTTMQRYQISQTENKIDEYLGKLEKVKAVRKELKLHLQ
NLPDLTKLPSPVPLPSAGDLFATRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038450XLOC_038450Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061282TCONS_00061282Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006569CID_dom
IPR008942ENTH_VHS
IPR006903RNA_pol_II-bd
IPR032337CREPT
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 225..245
NoneNo IPR availableCOILSCoilCoilcoord: 271..291
NoneNo IPR availableCDDcd03562CIDcoord: 3..119
e-value: 1.05468E-23
score: 92.6605
IPR006569CID domainSMARTSM00582558neu5coord: 8..130
e-value: 2.1E-30
score: 117.0
IPR006569CID domainPROSITEPS51391CIDcoord: 1..133
score: 41.504
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 1..139
e-value: 2.4E-34
score: 117.8
IPR008942ENTH/VHSSUPERFAMILY48464ENTH/VHS domaincoord: 4..129
IPR006903RNA polymerase II-binding domainPFAMPF04818CTD_bindcoord: 56..117
e-value: 1.2E-15
score: 58.0
IPR032337Cell-cycle alteration and expression-elevated protein in tumourPFAMPF16566CREPTcoord: 180..321
e-value: 1.4E-44
score: 151.7

Blast
[Close]
BLAST of TCONS_00061282-protein vs. Swiss-Prot (Human)
Match: RPR1A (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.158e-82
Identity = 136/326 (41.72%), Postives = 205/326 (62.88%), Query Frame = 0 
Query:    1 MSSFSTSHLEKRVKALTMSQQSIQTLSLWCIHHRKSAKIIVKHWLKDLLKAKVKKKLALMYLANDVLQNSRKKGTEFNQEFRIVMLGAVNHCIHTADDKLANALKRMHGIWTERNVFEEDFLSTIQQAIGGGEKQDASTTPPLDQMPIDESEFMMTTTDELATATTVAPIHPPDHPPDPDELVLRLQELEHSATQDAVVREQIANLPTEVTDPTYIDKVEDLESARRLQEKINSACELLQEYNTRLSVEQVDREQTRKMLLDYTTMQRYQISQTENKIDEYLGKLEKVKAVRKELKLHLQNLPDLTKLP----SPVPLPSAGDLFA 322
            MS+FS + LEK++  L+ SQQS+QTLSLW IHHRK ++ IV  W ++L KAK  +KL  +YLANDV+QNS++KG EF ++F  V++ A  H     D+     L R+  IW ER+V+E D L  ++QA+ G +K    T    +Q+ +DE+E               + +  P  PP   +LV  LQ+LE++A+ DA V ++IA+LP EV + + +DK+ D ES  RL + +  AC LL +YN RL+ E  DR+Q  +ML D+   Q+  +++ E+K++EY  KL +V  VRKEL+  +Q+LPDL++LP    S + LP AGD+++
Sbjct:    1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRT---YEQIKVDENE-------------NCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRIQSLPDLSRLPNVTGSHMHLPFAGDIYS 310
The following BLAST results are available for this feature:
BLAST of TCONS_00061282-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPR1A1.158e-8241.72Regulation of nuclear pre-mRNA domain-containing p... [more]
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