TCONS_00060671-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060671-protein
Unique NameTCONS_00060671-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length108

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060671-protein ID=TCONS_00060671-protein|Name=TCONS_00060671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MTEAKEDAGQQDAYDYKRLHSYPLIRYSDMSEEMRVEAMELCVTACEKFA
ANNEAAAKMIKESLDKKFGSSWHCVVGEGYGFDITHEVKNLLYLYFGGSI
AVTLWKCS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038150XLOC_038150Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060671TCONS_00060671Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0030286 dynein complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 18..107
e-value: 3.6E-41
score: 152.8
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 23..107
e-value: 5.9E-28
score: 96.9
NoneNo IPR availableGENE3D3.30.740.10coord: 20..108
e-value: 6.8E-25
score: 86.7
NoneNo IPR availableSUPERFAMILY54648DLCcoord: 15..107

Blast
[Close]
BLAST of TCONS_00060671-protein vs. Swiss-Prot (Human)
Match: DNAL4 (Dynein light chain 4, axonemal OS=Homo sapiens GN=DNAL4 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.760e-59
Identity = 77/103 (74.76%), Postives = 93/103 (90.29%), Query Frame = 0 
Query:    6 EDAGQQDAYDYKRLHSYPLIRYSDMSEEMRVEAMELCVTACEKFAANNEAAAKMIKESLDKKFGSSWHCVVGEGYGFDITHEVKNLLYLYFGGSIAVTLWKCS 108
            E  G++D  DYKRL ++PL+R+SDM EEMRVE MELCVTACEKF+ NNE+AAKMIKE++DKKFGSSWH V+GEG+GF+ITHEVKNLLYLYFGG++AV +WKCS
Sbjct:    3 ETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 105
The following BLAST results are available for this feature:
BLAST of TCONS_00060671-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAL43.760e-5974.76Dynein light chain 4, axonemal OS=Homo sapiens GN=... [more]
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