TCONS_00060283-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060283-protein
Unique NameTCONS_00060283-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060283-protein ID=TCONS_00060283-protein|Name=TCONS_00060283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp
MTFNSLVAGECGGANPLMKLTEHVHNHSHSERTVDQYKKENGLSNIAIPQ
TFNMQNLLDEMQDLQRPVGMANISHVENTARDWQQDYTSQYHPKMITPKP
DVRLKEVRSANVDNRFNHFQPSYQPVFRPPPSISMQRNSQQNWAHQFLDD
SLKEVEHRDREEEKTGKEILESLEAEGDLSKQWVDEFSKKESVITQTQNE
NEEEEDEDYLNSIPDVTDADVEYWEKLQKDFDELFKNESLMNNEEHSLNS
PVSEKEYSFEDSNPFSGHKNPFEEGVKKLNEGDLISAILLFEEAVTQQPE
HAEAWQYLGTSQAENEQEFLSIKALNKCVELQPDNLEAWMALSVSYTNES
MYLQACQSLKSWIKNNPKYENILSNQLIPTGDLKSEARSNILSSSLVSTE
TLKEVENIFLTAARLSPQQTIDPQIQIGLGILFNISHEYEKAIDCFKTGL
QVKPDSALLWNKLGATLANSGKSAEAIEAYRNALSLRPGFIRCRYNLGIS
CINLKAYDTAIEHFLSALNMQRQGEDPTRTASTMSENIWDTLRMTMSLHG
RSDLLKAVEKRDLGVINREMKTR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037919XLOC_037919Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060283TCONS_00060283Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR013105TPR_2
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 187..207
NoneNo IPR availableGENE3D1.20.960.10coord: 394..463
e-value: 6.0E-17
score: 60.4
NoneNo IPR availableGENE3D1.10.150.200coord: 502..551
e-value: 2.2E-4
score: 20.6
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 423..456
e-value: 0.023
score: 23.8
coord: 457..490
e-value: 2.2E-4
score: 30.6
coord: 491..524
e-value: 0.52
score: 19.4
coord: 302..335
e-value: 1.6
score: 17.7
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 302..335
score: 8.142
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 336..369
score: 6.077
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 457..490
score: 10.355
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 423..456
score: 10.03
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 491..524
score: 6.962
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 268..301
score: 6.284
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 457..489
e-value: 3.7E-5
score: 23.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 269..332
e-value: 7.6E-11
score: 41.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 333..393
e-value: 7.1E-7
score: 28.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 464..501
e-value: 1.7E-11
score: 43.4
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 253..570
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 268..524
score: 29.303

Blast
[Close]
BLAST of TCONS_00060283-protein vs. Swiss-Prot (Human)
Match: PEX5 (Peroxisomal targeting signal 1 receptor OS=Homo sapiens GN=PEX5 PE=1 SV=3)

HSP 1 Score: 399.438 bits (1025), Expect = 4.854e-132
Identity = 241/645 (37.36%), Postives = 340/645 (52.71%), Query Frame = 0 
Query:    1 MTFNSLVAGECGGANPLMKLTEHVHNH------------------------------SHSERTVDQYKKENGLSNIAIPQTFNMQNLLDEMQDL---------QRPVGMANISHVENTAR------------------DWQQDYTSQY-HPKMITP-----------KPDVRLKEVRSANVDNRFNHFQPSYQPVFRPPPSISMQRNSQQNWAHQFLDDSLKEVEH-RDREEEKTGKEILESLEAEGDL-SKQWVDEFSKKES-----VITQTQNENEEEEDEDYLNSIPDVTDADVEYWEKLQKDFDELFKNESLMN---NEEHSLNSPVSEKEYSFEDSNPFSGHKNPFEEGVKKLNEGDLISAILLFEEAVTQQPEHAEAWQYLGTSQAENEQEFLSIKALNKCVELQPDNLEAWMALSVSYTNESMYLQACQSLKSWIKNNPKYENILSNQLIPTGDLKSEARSNILSSSLVSTETLKEVENIFLTAARLSPQQTIDPQIQIGLGILFNISHEYEKAIDCFKTGLQVKPDSALLWNKLGATLANSGKSAEAIEAYRNALSLRPGFIRCRYNLGISCINLKAYDTAIEHFLSALNMQRQGEDPTRTASTMSENIWDTLRMTMSLHGRSDLLKAVEKRDLGVI 566
            M    LV  ECGGANPLMKL  H                                  S  E   +  + +N       PQTF M +LL EMQ +         QR  G+A+++  EN A+                  DW Q++ S+   P  ++P           +  + L E      D  ++ + P               +++  ++  +  D  L   E  +   +   G+  LES    G   ++QW  EF +++      V   T+  N    D ++        ++DV++W+KLQ + +E+ K ++  +   ++   L S   +K Y FE+ NP   H  PFEEG+++L EGDL +A+LLFE AV Q P+H EAWQYLGT+QAENEQE L+I AL +C+EL+PDN  A MAL+VS+TNES+  QAC++L+ W++  P Y ++++      G         IL S L+S     EV+ +FL A RL P  +IDP +Q GLG+LFN+S EY+KA+DCF   L V+P+  LLWNKLGATLAN  +S EA+ AYR AL L+PG+IR RYNLGISCINL A+  A+EHFL ALNMQR+   P      MSENIW TLR+ +S+ G+SD   A + RDL  +
Sbjct:    1 MAMRELVEAECGGANPLMKLAGHFTQDKALRQEGLRPGPWPPGAPASEAASKPLGVASEDELVAEFLQDQNAPLVSRAPQTFKMDDLLAEMQQIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDAVDVTQDYNETDWSQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGTATDRWYDEYHPEED-----------LQHTASDFVAKVDDPKLANSEFLKFVRQIGEGQVSLESGAGSGRAQAEQWAAEFIQQQGTSDAWVDQFTRPVNTSALDMEF-ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 631
The following BLAST results are available for this feature:
BLAST of TCONS_00060283-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PEX54.854e-13237.36Peroxisomal targeting signal 1 receptor OS=Homo sa... [more]
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