TCONS_00060282-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060282-protein
Unique NameTCONS_00060282-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060282-protein ID=TCONS_00060282-protein|Name=TCONS_00060282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MASQAHMSHEVVPDALPYIDQGYDEASVHTMVNELIEEETKRYRPTKNYL
EFMPPANYSQFETKLMKTEFERISNRQPMELLSMKRYELPQPPANQKNDI
SAWTDCLKNSMAQLQHQSERVANLDLLSQYGTDSWRSHCEILQRMFEAQQ
RKHAEIKRRIQEINWERKSDQKKAGSDLQHLEESWIGLVSKNYEIERAIV
ETEKEVETLRQEVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037918XLOC_037918Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060282TCONS_00060282Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 192..214
NoneNo IPR availableCOILSCoilCoilcoord: 139..166
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 12..212
e-value: 9.3E-71
score: 237.7

Blast
[Close]
BLAST of TCONS_00060282-protein vs. Swiss-Prot (Human)
Match: SPF27 (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 8.651e-79
Identity = 111/212 (52.36%), Postives = 157/212 (74.06%), Query Frame = 0 
Query:    1 MASQAHMSHEVVPDALPYIDQGYDEASVHTMVNELIEEETKRYRPTKNYLEFMPPANYSQFETKLMKTEFERISNRQPMELLSMKRYELPQPPANQKNDISAWTDCLKNSMAQLQHQSERVANLDLLSQYGTDSWRSHCEILQRMFEAQQRKHAEIKRRIQEINWERKSDQKKAGSDLQHLEESWIGLVSKNYEIERAIVETEKEVETLRQE 212
            MA    ++ EVV DALPY DQGY+   V      L+EEET+RYRPTKNYL ++   +YS FET +M+ EFER++ RQP+ELLSMKRYELP P + QKNDI+AW +C+ NSMAQL+HQ+ R+ NL+L+SQ+G ++W+ + E L  M E  Q++  ++++ IQ++NW+RK+ Q  AGS L+ +E +W+ LVSKNYEIER IV+ E E+  ++Q+
Sbjct:    1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQ 212
The following BLAST results are available for this feature:
BLAST of TCONS_00060282-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPF278.651e-7952.36Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=... [more]
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