TCONS_00060112-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060112-protein
Unique NameTCONS_00060112-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length158

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060112-protein ID=TCONS_00060112-protein|Name=TCONS_00060112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
VIWDILRCWIKLHPINRKKITERSPAHIILEKDPELEASFEILKEATPKS
KQMKLTRFPINPEADWGPKARAKQSTQFSSLAEKRHALQGKRTLKKTDPD
FHKQFPCKRFKRGECELGTTCKYNHPVTKDDVGQTREKDSKEENPLNETE
ESPLAMES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037821XLOC_037821Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060112TCONS_00060112Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 103..126
e-value: 3.8E-5
score: 23.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 101..128
score: 11.948
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 99..128
NoneNo IPR availableGENE3D4.10.1000.10coord: 88..152
e-value: 2.0E-6
score: 27.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..80

Blast
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BLAST of TCONS_00060112-protein vs. Swiss-Prot (Human)
Match: TRM1 (tRNA (guanine(26)-N(2))-dimethyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.080e-30
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = 0 
Query:    2 IWDILRCWIKLHPINRKKITERSPAHIILEKDPELEASFEILKEATPKSKQMKLTRFPINPEADWGPKARAKQSTQFS--SLAEKRHALQGKRTLKKTDPDFH----KQFPCKRFKRGECELGTTCKYNH 125
            +WDI+RCW K  P+ R++++E SPA  IL  +P L+A+F I ++A P S+Q  L RF  NPEA+WGP+ RA+   + +  ++ E+R  LQ KR     D        K FPCKRFK G C+ G  C Y+H
Sbjct:  495 LWDIMRCWEKECPVKRERLSETSPAFRILSVEPRLQANFTIREDANPSSRQRGLKRFQANPEANWGPRPRARPGGKAADEAMEERRRLLQNKRKEPPEDVAQRAARLKTFPCKRFKEGTCQRGDQCCYSH 624
The following BLAST results are available for this feature:
BLAST of TCONS_00060112-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRM15.080e-3043.85tRNA (guanine(26)-N(2))-dimethyltransferase OS=Hom... [more]
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