TCONS_00059734-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059734-protein
Unique NameTCONS_00059734-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059734-protein ID=TCONS_00059734-protein|Name=TCONS_00059734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
QVMHDGSVTWWESLIMVCMYIGYIILMKCNPRIVDKINSRKKRAQPDVSF
TNNGDKSSCLVDNEEALKGSSAKEELLLPKVEFSPDDERGQRRNDLLPAG
SRRRLTWKELGMMIMMTDKFSPTTRFRAACLVVILRGEHKSATPEEKEKI
LRKNEANDNYQTVNNGDIEGHGGDDDREESIEGTPFLYPQGSIVRIIFWI
LSLPLVIILYFTIPDCRKPKWEAWYILTFILSIFWICIFSYVMVWMVSLI
GFTFGIPDVIMGLVFLAAGTSIPDAISSLLVAKEGLGDMAVSNSIGSNVF
DILIGLAVPWFIRTAMVNPGSTVHLNSRGMVFSVALLFASVLFTVLVIHL
NKWKLDKKLGIIFFLVYLVFITFSSLIEFNVFGFVNYPVCAFHG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037574XLOC_037574Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059734TCONS_00059734Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 1..359
e-value: 6.6E-7
score: 28.3
IPR004837Sodium/calcium exchanger membrane regionPFAMPF01699Na_Ca_excoord: 224..374
e-value: 4.9E-27
score: 94.7

Blast
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BLAST of TCONS_00059734-protein vs. Swiss-Prot (Human)
Match: NCKX4 (Sodium/potassium/calcium exchanger 4 OS=Homo sapiens GN=SLC24A4 PE=1 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 6.407e-100
Identity = 165/408 (40.44%), Postives = 250/408 (61.27%), Query Frame = 0 
Query:    3 MHDGSVTWWESLIMVCMYIGYIILMKCNPRIVDKINSRKKRAQPDVSFTNNGDKSSCLVDNEEALKGSSAKEEL-LLPKVEFSPDDERGQR-RNDLLPAGSRRRLTWKELGMMIMMTDKFSPTTRFRAACLVVILRGEHKSATPEEKEKILRKNEANDNYQTVNNGDIEGHGGDDDRE------------------ESIEGTPFLYPQGSIVRIIFWILSLPLVIILYFTIPDCRKPKWEAWYILTFILSIFWICIFSYVMVWMVSLIGFTFGIPDVIMGLVFLAAGTSIPDAISSLLVAKEGLGDMAVSNSIGSNVFDILIGLAVPWFIRTAMVNPGSTVHLNSRGMVFSVALLFASVLFTVLVIHLNKWKLDKKLGIIFFLVYLVFITFSSLIEFNVFGFVNYPVC 390
            ++D  + WWE L+++ +Y+ YI++MK N ++      ++K      S  N    +S L    +   GS     + LL +V+  P   +      D + + S  + T+ E G+ IM+T+KF P TR R A  ++I     +         +  K   N  ++ + NG++     +D ++                  E+   +PF  P+    ++  W+ + PL+ +L  TIP+C KP+WE ++++TFI +  WI +FSY+MVW+V++IG+T GIPDVIMG+ FLAAGTS+PD ++SL+VA++GLGDMAVSN+IGSNVFDIL+GL VPW ++T +VN GSTV +NSRG+V+SV LL  SV  TVL IHLNKW+LD+KLG+   ++Y +F+ FS +IEFNVF FVN P+C
Sbjct:  221 IYDEQIVWWEGLVLIILYVFYILIMKYNVKMQAFFTVKQK------SIANGNPVNSELEAGNDFYDGSYDDPSVPLLGQVKEKPQYGKNPVVMVDEIMSSSPPKFTFPEAGLRIMITNKFGPRTRLRMASRIII---NERQRLINSANGVSSKPLQNGRHENIENGNVPVENPEDPQQNQEQQPPPQPPPPEPEPVEADFLSPFSVPEARGDKVK-WVFTWPLIFLLCVTIPNCSKPRWEKFFMVTFITATLWIAVFSYIMVWLVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVFDILVGLGVPWGLQTMVVNYGSTVKINSRGLVYSVVLLLGSVALTVLGIHLNKWRLDRKLGVYVLVLYAIFLCFSIMIEFNVFTFVNLPMC 618
The following BLAST results are available for this feature:
BLAST of TCONS_00059734-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX46.407e-10040.44Sodium/potassium/calcium exchanger 4 OS=Homo sapie... [more]
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