|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00059700-protein ID=TCONS_00059700-protein|Name=TCONS_00059700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp
MAKASADKDFDHLYKLVLVGDSGTGKTGLVSRFARDESNVNKQSTIGIDF
KIRSIKAAGKTIKTQIWDTAGGERFRTITKAYYRGAVGVFIVYNVSVQKT
FENVQRWLDDVREYSGPEVVLMLVGNQTVVEDSAAKEGSVNTKEAQEFAK
QNHLMFMETSTLDGSNVELAFISMVQKIYEKQNKLEKDDEVELFQAPENL
EDQRGYEFDTVGDSRRRGHECAFCNMIIKQFTELPCGHGFCGSCLETWEL
KEDEGKNPISCILCKKEYDVTKKQTSNFIDRQITADLEVYCKKKDEGCKW
SSFIVDFEGHYKNECQFAIIQCVFDGCELYFKRKDKAIHNKNCVKRIVQC
PHCKQDFQFFKLNNPHFGECDQFPVDCLNEGCEVNLPRIEMKNKHGPACK
WERVGCQFEDFGCQTKLLRSEEVKHNNEFNIQHTMLLMAKQRETLNDLQT
TKNDLQTTKNELQTTTTDLQTTKNDLQTTKNELLESKKSLEEQKNLNKEI
VNNINRLHVANSSVESLLSLLVNGDIPRAHTKPIVYDGVEFCSSLGNHQQ
MMNTILSKMEFGKTYKTDLGKRLFFTFRMIHDVTLYFQLYNNYDLASTRE
SYRKQNMLVDGRDQLILVYFDKNRGDQYQVWMNNRDFTKTNSSVFLHNMK
KNGDRRQIRYHVLENIAWDDYRNEDKYVLFELMKK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
| GO:0046872 | metal ion binding |
| GO:0051537 | 2 iron, 2 sulfur cluster binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 438..496 |
| None | No IPR available | PRINTS | PR00449 | RASTRNSFRMNG | coord: 37..53
score: 27.52
coord: 55..77
score: 46.89
coord: 14..35
score: 48.01
coord: 117..130
score: 32.74
coord: 156..178
score: 36.3 |
| None | No IPR available | SMART | SM00174 | rho_sub_3 | coord: 16..181
e-value: 3.6E-7
score: -26.3 |
| None | No IPR available | SMART | SM00175 | rab_sub_5 | coord: 14..181
e-value: 1.5E-73
score: 260.3 |
| None | No IPR available | SMART | SM00173 | ras_sub_4 | coord: 11..181
e-value: 5.3E-10
score: 26.7 |
| None | No IPR available | SMART | SM00176 | ran_sub_2 | coord: 19..223
e-value: 7.4E-5
score: 20.0 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 78..179
e-value: 9.6E-27
score: 92.4 |
| None | No IPR available | GENE3D | 3.30.70.1390 | | coord: 12..77
e-value: 2.4E-23
score: 81.4 |
| None | No IPR available | GENE3D | 1.20.120.330 | | coord: 423..517
e-value: 2.5E-4
score: 20.2 |
| None | No IPR available | PROSITE | PS51419 | RAB | coord: 9..224
score: 32.334 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 220..271 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 221..264
e-value: 0.0024
score: 27.1 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 221..265
score: 10.468 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 220..267
e-value: 4.93924E-4
score: 37.4252 |
| IPR001293 | Zinc finger, TRAF-type | PFAM | PF02176 | zf-TRAF | coord: 366..425
e-value: 3.3E-7
score: 30.8 |
| IPR001293 | Zinc finger, TRAF-type | PROSITE | PS50145 | ZF_TRAF | coord: 366..413
score: 10.525 |
| IPR001293 | Zinc finger, TRAF-type | PROSITE | PS50145 | ZF_TRAF | coord: 310..357
score: 8.918 |
| IPR005225 | Small GTP-binding protein domain | TIGRFAM | TIGR00231 | TIGR00231 | coord: 14..171
e-value: 7.5E-25
score: 85.6 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 330..364
e-value: 0.0091
score: 15.7
coord: 368..422
e-value: 1.7E-7
score: 30.8
coord: 283..329
e-value: 1.6E-9
score: 37.3 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 203..282
e-value: 1.1E-10
score: 40.4 |
| IPR001806 | Small GTPase superfamily | PFAM | PF00071 | Ras | coord: 15..179
e-value: 1.6E-47
score: 161.1 |
| IPR018957 | Zinc finger, C3HC4 RING-type | PFAM | PF00097 | zf-C3HC4 | coord: 221..264
e-value: 1.5E-4
score: 21.5 |
| IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site | PROSITE | PS00197 | 2FE2S_FER_1 | coord: 236..244 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 236..245 |
| IPR008974 | TRAF-like | SUPERFAMILY | 49599 | TRAF domain-like | coord: 287..358 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 10..191 |
Blast
BLAST of TCONS_00059700-protein vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3) HSP 1 Score: 196.052 bits (497), Expect = 2.128e-58 Identity = 94/193 (48.70%), Postives = 138/193 (71.50%), Query Frame = 0
Query: 7 DKDFDHLYKLVLVGDSGTGKTGLVSRFARDESNVNKQSTIGIDFKIRSIKAAGKTIKTQIWDTAGGERFRTITKAYYRGAVGVFIVYNVSVQKTFENVQRWLDDVREYSGPEVVLMLVGNQTVVEDSAAKEGSVNTKEAQEFAKQNHLMFMETSTLDGSNVELAFISMVQKIYEKQNKLEKDDEVELFQAPEN 199
D ++D+L+K+VL+GDSG GK+ L+SRF R+E N+ +STIG++F RSI+ GKTIK QIWDTAG ER+R IT AYYRGAVG +VY+++ T+ENV+RWL ++R+++ +V+MLVGN++ + A V T EA+ FA++N L F+ETS LD +NVE AF +++ +IY ++ + D E +P N
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA----VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193
The following BLAST results are available for this feature:
|
