TCONS_00058009-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058009-protein
Unique NameTCONS_00058009-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length107

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058009-protein ID=TCONS_00058009-protein|Name=TCONS_00058009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MSLVLPEKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADI
DMNKRAGELSDEEVERLITIMQNPRQYKIPDYFLNRKKDIKDGKYSQVSI
FNATLIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036565XLOC_036565Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058009TCONS_00058009Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR010979Ribosomal_S13-like_H2TH
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.50coord: 1..80
e-value: 3.5E-39
score: 132.3
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 5..98
e-value: 8.1E-17
score: 59.4
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 14..98
e-value: 1.9E-29
score: 102.5
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 15..91
score: 16.768
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 13..77

Blast
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BLAST of TCONS_00058009-protein vs. Swiss-Prot (Human)
Match: RS18 (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 6.107e-57
Identity = 75/98 (76.53%), Postives = 94/98 (95.92%), Query Frame = 0 
Query:    1 MSLVLPEKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADIDMNKRAGELSDEEVERLITIMQNPRQYKIPDYFLNRKKDIKDGKYSQV 98
            MSLV+PEKFQHILRV+NTNIDG+ KI +A+T+IKGVGRR++++ L+KADID+ KRAGEL+++EVER+ITIMQNPRQYKIPD+FLNR+KD+KDGKYSQV
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
The following BLAST results are available for this feature:
BLAST of TCONS_00058009-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS186.107e-5776.5340S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
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