TCONS_00057972-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057972-protein
Unique Name	TCONS_00057972-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	513

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057972-protein ID=TCONS_00057972-protein|Name=TCONS_00057972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MENSKSLEASYSSKTNSTVVLVEPSNSSTGNKGKLTFHLALGAIVCFAGS
SLQFGYNLSVINAPQSVIEKHFENVKRFKEFLWPFAVAIFAVGGMGGAFI
GPYIAKAIGRKRTLMLNNALAISGGIFLGVTKMADSVTILVIGRFLVGIN
AGVNTVVAPMYLSEIAPINLRGSLGTLNQFGIVSGLLLGNILGLGEILGN
ENGWPYLFAITGVIGVLQLCVLPFCSESPRYLLAIKKDEANAIINLQKLR
GSDDVQAEIQEIKMDAEKEASQETVSIIELFKNSYYHKPLLISVVLQLAQ
QLSGIGGILYYSTELFKEIGLSIPESQKASCGVGALSVIMTLVCMVLVDK
KGRRFLLLVGLGGMIVLYAVTTVAFKYVEDKKDWAPILGVVCTLGAVVFF
QAGPGAIPWFIVAELFSQNSLSAAVSVAGPMNWLGNFVVGLLFPVIKDKV
HPYTFIPFIVLLVIFFAFTYLVVPETKGLSIAQINRILRKDGGAAGYPDE
ADKKDEGVTPYTC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036540	XLOC_036540	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057972	TCONS_00057972	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003663	Sugar/inositol_transpt
IPR005828	MFS_sugar_transport-like
IPR005829	Sugar_transporter_CS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022891	substrate-specific transmembrane transporter activity
GO:0022857	transmembrane transporter activity
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0022891	substrate-specific transmembrane transporter activity
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003663	Sugar/inositol transporter	PRINTS	PR00171	SUGRTRNSPORT	coord: 141..160 score: 35.79 coord: 390..411 score: 28.03 coord: 51..61 score: 41.67 coord: 413..425 score: 31.47 coord: 300..310 score: 50.38
IPR003663	Sugar/inositol transporter	TIGRFAM	TIGR00879	TIGR00879	coord: 29..484 e-value: 4.3E-103 score: 343.5
None	No IPR available	GENE3D	1.20.1250.20		coord: 260..495 e-value: 1.7E-33 score: 115.2
None	No IPR available	GENE3D	1.20.1250.20		coord: 37..242 e-value: 1.1E-24 score: 86.4
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 46..487 e-value: 5.5E-113 score: 378.1
IPR005829	Sugar transporter, conserved site	PROSITE	PS00217	SUGAR_TRANSPORT_2	coord: 146..171
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 43..477 score: 39.388
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 44..473 e-value: 3.71829E-19 score: 86.5989
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 38..484

Blast

[Close]

BLAST of TCONS_00057972-protein vs. Swiss-Prot (Human)
Match: GTR1 (Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens GN=SLC2A1 PE=1 SV=2)

HSP 1 Score: 388.652 bits (997), Expect = 1.350e-130
Identity = 212/495 (42.83%), Postives = 306/495 (61.82%), Query Frame = 0

Query:   22 VEPSNSSTGNKGKLTFHLALGAIVCFAGSSLQFGYNLSVINAPQSVIEKHFEN--VKRFKE--------FLWPFAVAIFAVGGMGGAFIGPYIAKAIGRKRTLMLNNALAISGGIFLGVTKMADSVTILVIGRFLVGINAGVNTVVAPMYLSEIAPINLRGSLGTLNQFGIVSGLLLGNILGLGEILGNENGWPYLFAITGVIGVLQLCVLPFCSESPRYLLAIKKDEANAIINLQKLRGSDDVQAEIQEIKMDAEKEASQETVSIIELFKNSYYHKPLLISVVLQLAQQLSGIGGILYYSTELFKEIGLSIPESQKASCGVGALSVIMTLVCMVLVDKKGRRFLLLVGLGGMIVLYAVTTVAFKYVEDKKDWAPILGVVCTLGAVVFFQAGPGAIPWFIVAELFSQNSLSAAVSVAGPMNWLGNFVVGLLFPVIKDKVHPYTFIPFIVLLVIFFAFTYLVVPETKGLSIAQINRILRKDGGAAGYPDEADKKDE 506
            +EPS+      G+L   LA+G  V     SLQFGYN  VINAPQ VIE+ +    V R+ E         LW  +VAIF+VGGM G+F         GR+ ++++ N LA    + +G +K+  S  +L++GRF++G+  G+ T   PMY+ E++P  LRG+LGTL+Q GIV G+L+  + GL  I+GN++ WP L +I  +  +LQ  VLPFC ESPR+LL  + +E  A   L+KLRG+ DV  ++QE+K ++ +   ++ V+I+ELF++  Y +P+LI+VVLQL+QQLSGI  + YYST +F++ G+  P    A+ G G ++   T+V + +V++ GRR L L+GL GM     + T+A   +E +  W   L +V   G V FF+ GPG IPWFIVAELFSQ    AA++VAG  NW  NF+VG+ F  ++    PY FI F VLLV+FF FTY  VPETKG +  +I    R+ G +     ++DK  E
Sbjct:    1 MEPSSKKL--TGRLM--LAVGGAVL---GSLQFGYNTGVINAPQKVIEEFYNQTWVHRYGESILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFGLDSIMGNKDLWPLLLSIIFIPALLQCIVLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTHDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQP--VYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALALLE-QLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQGGAS-----QSDKTPE 480

The following BLAST results are available for this feature:

BLAST of TCONS_00057972-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057972-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GTR1	1.350e-130	42.83	Solute carrier family 2, facilitated glucose trans...	[more]

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TCONS_00057972-protein (polypeptide) - C. hemisphaerica