TCONS_00057619-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057619-protein
Unique NameTCONS_00057619-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057619-protein ID=TCONS_00057619-protein|Name=TCONS_00057619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
YFEIFILLTIAVNCVFMALSDPPELMEFIFAAIYTLEMIIKILAKGFVMH
KYSYLRNSWNWLDFVVVVLGYVTMTPWVNNLDGFRTFRVLRALKTISTVK
GLKAMVNTLLKSMKMMTDVIILTLFFI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036339XLOC_036339Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057619TCONS_00057619Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 1..127
e-value: 3.0E-35
score: 121.5
NoneNo IPR availableGENE3D1.10.287.70coord: 1..127
e-value: 4.4E-32
score: 110.8
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1..127

Blast
[Close]
BLAST of TCONS_00057619-protein vs. Swiss-Prot (Human)
Match: SCN5A (Sodium channel protein type 5 subunit alpha OS=Homo sapiens GN=SCN5A PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.543e-40
Identity = 64/127 (50.39%), Postives = 91/127 (71.65%), Query Frame = 0 
Query:    2 FEIFILLTIAVNCVFMALSDPP---ELMEFIFAAIYTLEMIIKILAKGFVMHKYSYLRNSWNWLDFVVVVLGYVTMTPWVNNLDGFRTFRVLRALKTISTVKGLKAMVNTLLKSMKMMTDVIILTLF 125
            F + I+ TI  NCVFMA  DPP   + +E+ F AIYT E ++KILA+GF +H +++LR+ WNWLDF V+++ Y T    + N+   RTFRVLRALKTIS + GLK +V  L++S+K + DV++LT+F
Sbjct:  133 FNMLIMCTILTNCVFMAQHDPPPWTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLRDPWNWLDFSVIIMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGALIQSVKKLADVMVLTVF 259
The following BLAST results are available for this feature:
BLAST of TCONS_00057619-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCN5A8.543e-4050.39Sodium channel protein type 5 subunit alpha OS=Hom... [more]
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