Cytochrome b-c1 complex subunit protein (polypeptide) - C. hemisphaerica

Overview


Name	Cytochrome b-c1 complex subunit protein
Unique Name	TCONS_00057513-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	516

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057513-protein ID=TCONS_00057513-protein|Name=Cytochrome b-c1 complex subunit protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MQVTRLHGIFFGSVVLTFCVRVQNCSQSSVDTKLSSFWLFRERFFLNMLP
SRGQKLASALARSLKSSTKNYSAAAVPLTESLEEDTISRKSPVVNSELKV
TKLSNGICVASVDTGATVSRLSISSNVGSRHETAANLGINHLLKNASFLD
NGERTSLRTVREVQEVGGSLEVNSSREVSSRTAAFLRNKLPEVMENIAPG
ITKPLYQAWEITDARNFSNQQNITVKGDDSAVNIENLHKAAYRTGLGNSL
YCDDLSLGVYSSTEIAEYAQSNFVGNKMTIVGTDVSHDELVRYANDLFGS
IQAGDKQVTPQQKYYGGDSRAHTSNEFTYASLVGEGVGMFNGDLATYLVL
QRILGVGPYTKWGDNTQSSRLAKAAQAAVSGPLSINALNVSYSDSGLFGF
NAITSPQNIGAVMKSAVTEIGNISKGQLSTEELERAKTQAKATILMLGES
KDDLLDDLVKQITFNGSYVSPSQAVSSVDKVSVDNIAQAAKKLFAGKSTM
SVTGNIATAPYADELM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036253	XLOC_036253	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057513	TCONS_00057513	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011765	Pept_M16_N
IPR007863	Peptidase_M16_C
IPR011249	Metalloenz_LuxS/M16

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0046872	metal ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.830.10		coord: 328..515 e-value: 2.2E-35 score: 121.4
None	No IPR available	GENE3D	3.30.830.10		coord: 75..309 e-value: 3.1E-26 score: 91.7
IPR011765	Peptidase M16, N-terminal	PFAM	PF00675	Peptidase_M16	coord: 109..253 e-value: 6.9E-18 score: 65.0
IPR007863	Peptidase M16, C-terminal	PFAM	PF05193	Peptidase_M16_C	coord: 263..439 e-value: 1.0E-20 score: 74.4
IPR011249	Metalloenzyme, LuxS/M16 peptidase-like	SUPERFAMILY	63411	LuxS/MPP-like metallohydrolase	coord: 97..305
IPR011249	Metalloenzyme, LuxS/M16 peptidase-like	SUPERFAMILY	63411	LuxS/MPP-like metallohydrolase	coord: 320..514

Blast

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BLAST of Cytochrome b-c1 complex subunit protein vs. Swiss-Prot (Human)
Match: QCR2 (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 2.718e-78
Identity = 145/420 (34.52%), Postives = 229/420 (54.52%), Query Frame = 0

Query:   97 ELKVTKLSNGICVASVDTGATVSRLSISSNVGSRHETAANLGINHLLKNASFLDNGERTSLRTVREVQEVGGSLEVNSSREVSSRTAAFLRNKLPEVMENIAPGITKPLYQAWEITDAR-NFSNQQNITVKGDDSAVNIENLHKAAYRTGLGNSLYCDDLSLGVYSSTEIAEYAQSNFVGNKMTIVGTDVSHDELVRYANDLFGSIQAGDKQVTPQQKYYGGDSRAHTSNEFTYASLVGEGVGMFNGDLATYLVLQRILGVGPYTKWGDNTQSSRLAKAAQAAVSGPLSINALNVSYSDSGLFGFNAITSPQNIGAVMKSAVTEIGNISKGQLSTEELERAKTQAKATILMLGESKDDLLDDLVKQITFNGSYVSPSQAVSSVDKVSVDNIAQAAKKLFAGKSTMSVTGNIATAPYADEL 515
            +L+ TKL NG+ +AS++  + VSR+ +    GSR+E  +NLG  HLL+  S L     +S +  R ++ VGG L V ++RE  + T   LR  +  +ME +    T P ++ WE+ D +      + +  +   + V IENLH AAYR  L N LYC D  +G  +S E+  + Q++F   +M ++G  VSH  L + A   F +++ G      +  Y GG+ R    +   +A+ V E     + +   + VLQ +LG GP+ K G NT +S L +A   A   P  ++A N SYSDSGLFG   I+     G V+K+A  ++  I++G LS  +++ AK + KA  LM  ES +  L+++  Q    GSY+ PS  +  +D V+  +I  AAKK  +G+ +M+ +GN+   P+ DEL
Sbjct:   37 DLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTAPEFRRWEVADLQPQLKIDKAVAFQNPQTHV-IENLHAAAYRNALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLGVSHPVLKQVAEQ-FLNMRGGLGLSGAKANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNT-TSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453

The following BLAST results are available for this feature:

BLAST of Cytochrome b-c1 complex subunit protein vs. Swiss-Prot (Human)

BLAST of Cytochrome b-c1 complex subunit protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
QCR2	2.718e-78	34.52	Cytochrome b-c1 complex subunit 2, mitochondrial O...	[more]

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Cytochrome b-c1 complex subunit protein (polypeptide) - C. hemisphaerica