TCONS_00056963-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056963-protein
Unique NameTCONS_00056963-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056963-protein ID=TCONS_00056963-protein|Name=TCONS_00056963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MAHIASVAKSAPVTKVAKPLLSVTNNEARRRVLNLYRSWWREIPHTIESH
ALDMTVKQGRSKVREMFELNRNVKDIRVIDMLVVKGTLELEETHQMWKQK
THVLKYFQEELKPKQRDFMQRFYEGYD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035873XLOC_035873Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056963TCONS_00056963Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
IPR016488NADH_Ub_cplx-1_asu_su-6
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 30..92
e-value: 4.0E-11
score: 42.7
IPR016488NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6PIRSFPIRSF006643NDUA6coord: 8..127
e-value: 9.6E-44
score: 146.2

Blast
[Close]
BLAST of TCONS_00056963-protein vs. Swiss-Prot (Human)
Match: NDUA6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens GN=NDUFA6 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.676e-42
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 0 
Query:    1 MAHIASVAKSAPVTKVAKPLLSVTNNEARRRVLNLYRSWWREIPHTIESHALDMTVKQGRSKVREMFELNRNVKDIRVIDMLVVKGTLELEETHQMWKQKTHVLKYFQEELKPKQRDFMQRFYEGYD 127
            MA       ++  +   KP+ S   NEA+RRV  LYR+W+RE+P+T+    LD+TVK GR KVREMF  N +V D RV+D+LV+KG +ELEET ++WKQ+THV+++F E   P+ +DF+ +FY G+D
Sbjct:   27 MAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLDITVKMGRDKVREMFMKNAHVTDPRVVDLLVIKGKIELEETIKVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHD 153
The following BLAST results are available for this feature:
BLAST of TCONS_00056963-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUA61.676e-4248.82NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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