TCONS_00056853-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056853-protein
Unique Name	TCONS_00056853-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	521

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056853-protein ID=TCONS_00056853-protein|Name=TCONS_00056853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MSRSKTTLASRIIREHFGDIVEKISSYLLQSGRKSLREICKDLTLSREEI
KKGLSILIQHHLVEYIEGRNGITEYNALLDNILRRRRFQKYVYCAKVKFG
DVAELVVETFLLNGCDTLSRASKRVADRLENDDMETEQRTDIDFVVQKCK
ELIRGQYLTRVKKPSPPASDEKDKEEEEDIKEEEKFTIPHGVGKKRKASS
PQPHSSKKVKLDSQDGASSDEQSKDVQYEDDGIYWCLNTQKFDQYFLDQL
IITATSERLDQSAGKIVSTMLKMTESDRNIMTPATKSVSIYDLCKKMPSV
PKLDENEVHQYLSLLSDDKTGGFVTKTDEAAGGMYAVNMRKSVEIICQAA
CSTIVQERFGSKACRVFRLLLEKRHLEQKQIGELAMIPFKDVKELLYKLF
EERMVKVQEITKTSDYAPSRTFYLFAVDLPQVVRLLMNRCFQAIGNMMIR
RDSEEEENKRLLEKNEKIEGILSALSGTTEDTEQVMRELEELITPTEKQQ
LEKLKINLARSVNSKYREFSL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035814	XLOC_035814	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056853	TCONS_00056853	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008806	RNA_pol_III_Rpc82_C
IPR024550	TFIIEa/SarR/Rpc3_HTH_dom
IPR013197	RNA_pol_III_RPC82-rel_HTH
IPR011991	WHTH_DNA-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 444..471
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..225
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 169..344 e-value: 1.7E-18 score: 67.2
IPR024550	TFIIEalpha/SarR/Rpc3 HTH domain	PFAM	PF02002	TFIIE_alpha	coord: 352..438 e-value: 7.6E-6 score: 25.6
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 8..67 e-value: 9.0E-21 score: 73.6
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 1..77 e-value: 1.3E-21 score: 76.0 coord: 84..173 e-value: 0.039 score: 13.5
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 340..429 e-value: 5.6E-27 score: 93.0
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 9..71
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 351..429

Blast

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BLAST of TCONS_00056853-protein vs. Swiss-Prot (Human)
Match: RPC3 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens GN=POLR3C PE=1 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 2.343e-125
Identity = 198/517 (38.30%), Postives = 319/517 (61.70%), Query Frame = 0

Query:    1 MSRSKTTLASRIIREHFGDIVEKISSYLLQSGRKSLREICKDLTLSREEIKKGLSILIQHHLVEYIEGRNGITEYNALLDNILRRRRFQKYVYCAKVKFGDVAELVVETFLLNGCDTLSRASKRVADRLENDDMETEQRTDIDFVVQKCKELIRGQYLTRVKKPSPPASDEKDKEEEED-----IKEEEKFTIPH----GVGKKRKASSPQPHSSKKVKLDSQDGASSDEQSKDVQYEDDGIYWCLNTQKFDQYFLDQLIITATSERLDQSAGKIVSTMLKMTESDRNIMTPATKSVSIYDLCKKMPSVPKLDENEVHQYLSLLSDDKTGGFVTKTDEAAGGMYAVNMRKSVEIICQAACSTIVQERFGSKACRVFRLLLEKRHLEQKQIGELAMIPFKDVKELLYKLFEERMVKVQEITKTSDYAPSRTFYLFAVDLPQVVRLLMNRCFQAIGNMMIRRDSEEEENKRLLEKNEKIEGILSALSGTTEDTEQVMRELEELITPTEKQQLEKLKINL 508
            M++++  L S +++EHFG+IVEKI  +L+++G + LR I  D   S +++KK L +L+QH+LV Y   + G+ EY A    +LR  R+ +Y+Y  K  + D  EL+VE  LLNG  T+S   K+VADRL  + ME  +  D   V      L    ++ R   PS P ++  D           I E++ + +P     G GK+R++S        K K   +   ++D +       DDGIYW  N  +F Q+F DQ I++A + R+DQ++ +IV TML+M+E   +   P T+ +S  ++ + +P    + +  + QYL+LL+DD    FV K+ ++ GGMY +N+ K++  +  A   ++VQERFGS+  R+FRL+L+K+H+EQKQ+ + AMIP K+ K++LYK+  E  + +QEI KT D+APSRTFYL+ V++    R+L++RC+++I N++ RR  E +ENKRLLEK++++E I++++  T  +  Q ++E+EE+IT  E+QQLE LK N+
Sbjct:    1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRL-TETMEDGKTMDYAEVSNTFVRLADTHFVQRC--PSVPTTENSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAK---RPKYTTDNKEP---IPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE-FVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQ-LQEIEEMITAPERQQLETLKRNV 506

The following BLAST results are available for this feature:

BLAST of TCONS_00056853-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056853-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPC3	2.343e-125	38.30	DNA-directed RNA polymerase III subunit RPC3 OS=Ho...	[more]

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TCONS_00056853-protein (polypeptide) - C. hemisphaerica