TCONS_00056760-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056760-protein
Unique Name	TCONS_00056760-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	603

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056760-protein ID=TCONS_00056760-protein|Name=TCONS_00056760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MFKPPKKEKDPILDLILQKYIQISRDSIHGPVALKTDKKLVSINKASENK
KIIFDKIPDEAKLESANLDGHNVSCFTVGGEKRLCFTEIVHTILKEVNVQ
EIFKKRDSLLIFTSKCTQKQLDELKYMEVLPWTTTSSNLITVSDAFRLIG
VLQSNLAPKADPVKRTALSFEVYHECFGGCIGLIEPELYTSLSAPCIRCT
ECNGLFSIQKFVSHNHSNYDEVHTCHWGFDSSNWRSYIMPVEQNPTRELV
NLWMSVKNKFNRPDLHYQTMEKSDNKRQDADFMAYINSPADNKKAMVSPI
ENLRNREAASAFRPWSPSPNSSKYPNSSHSKFQFPVPQKPSNRCDSHENL
PLSPVYMNCKQCKTAADACNRGGSRNDNEQNCNCKDCTRNKDSVEGSIQM
ILQDFTNKDNRLTTDPKDLAKVLANELKKLSLNNEEKVKEIAISNQRLQT
ELQLVKIESSKKLSEAKDTKMHIEQELELLHRERHKEMEVFSQLKHNLEQ
DISNQKKTGNPHEMETLYKELTLAKTHLQQAEIDRENLRKQLEWFMKNRK
NVMTDNWTPFPTMARQFSDSEEEAEDCREKSSNEGPSSKLMRLSEESDIE
VEN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035754	XLOC_035754	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056760	TCONS_00056760	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014890	c-SKI_SMAD4-bd_dom
IPR003380	Transform_Ski
IPR009061	DNA-bd_dom_put
IPR010919	SAND_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0046332	SMAD binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046332	SMAD binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 463..483
None	No IPR available	COILS	Coil	Coil	coord: 420..440
None	No IPR available	COILS	Coil	Coil	coord: 521..548
None	No IPR available	GENE3D	3.10.390.10		coord: 168..262 e-value: 8.1E-23 score: 80.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 562..603
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 310..343
IPR014890	c-SKI SMAD4-binding domain	SMART	SM01046	c_SKI_SMAD_bind_2	coord: 169..261 e-value: 1.3E-40 score: 150.9
IPR014890	c-SKI SMAD4-binding domain	PFAM	PF08782	c-SKI_SMAD_bind	coord: 169..260 e-value: 3.0E-31 score: 107.4
IPR003380	Transforming protein Ski	PFAM	PF02437	Ski_Sno	coord: 58..149 e-value: 4.9E-25 score: 87.3
IPR003380	Transforming protein Ski	GENE3D	3.10.260.20		coord: 59..151 e-value: 3.1E-23 score: 81.2
IPR009061	Putative DNA-binding domain	SUPERFAMILY	46955	Putative DNA-binding domain	coord: 59..150
IPR010919	SAND domain-like	SUPERFAMILY	63763	SAND domain-like	coord: 169..257

Blast

[Close]

BLAST of TCONS_00056760-protein vs. Swiss-Prot (Human)
Match: SKI (Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.125e-48
Identity = 107/293 (36.52%), Postives = 156/293 (53.24%), Query Frame = 0

Query:   68 LDGHNVSCFTVGGEKRLCFTEIVHTILKEVNVQEIFKKRDSLLIFTSKCTQKQLDELKYMEVLPWTTTSSNLITVSDAFRLI-GVLQSNLAP---KADPVKRTALSFE-------VYHECFGGCIGLIEPELYTSLSAPCIRCTECNGLFSIQKFVSHNHSNYDEVHTCHWGFDSSNWRSYIMPVEQNPTRE----LVNLWMSVKNKFNRPDLHYQTMEKSDN--------KRQDADFMAYINSPADNKKAMVSPIENLRN--------REAASAFRPWSPSPNSSKYPNSSH 329
            L+G  +SCF VGGEKRLC  +I++++L++ ++Q+I    D L I+ S+CT  QL+ LK M +LP++  S  LIT +DA RL   +L     P   K +     AL  E       VYHECFG C GL+ PELY+S SA CI+C +C  ++   KFV H+H    E  TCHWGFDS+NWR+YI+  +    +E    L      VK KF+  + + + + +  +        K  D    +   S  D   + +  +    N        R+  SAFRPWSP+ ++S+   S H
Sbjct:  105 LEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELSERSVRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKAL-ENRTCHWGFDSANWRAYILLSQDYTGKEEQARLGRCLDDVKEKFDYGNKYKRRVPRVSSEPPASIRPKTDDTSSQSPAPSEKDKPSSWLRTLAGSSNKSLGCVHPRQRLSAFRPWSPAVSASEKELSPH 396

The following BLAST results are available for this feature:

BLAST of TCONS_00056760-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056760-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SKI	1.125e-48	36.52	Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1	[more]

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TCONS_00056760-protein (polypeptide) - C. hemisphaerica