TCONS_00056573-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056573-protein
Unique Name	TCONS_00056573-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	659

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056573-protein ID=TCONS_00056573-protein|Name=TCONS_00056573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp
LTGSRRTNLRGNQPSNFFCYCAVFRKKAAFHSQQINWSIDSFKMSNPELE
EELSTEFGDIGIDIEGNLPVLEKLTGLCKTFKLTAEDITAQWMTFALKAT
ECTVITEETLDDFEKKQLLKGKKTSNVKKSSAQTPHRKSYTGNNISSLFD
EEDTMLGSYATTPESKQSIKRSHITPEQPSNKRFASIDATPISQRFSPAS
LSTPSLSTPSAKYEARSGKGDVLASFGQGVDNSTQIQWNGQGIQPHIRLY
VDSEEDSLKKPYKHMFQKLQDKADVLNEIINNLAEDMKSSLMLDESESVA
QTTEEKAIFSGRVCCDSVGRLNAKSVVLEGSRETSAGQRIPLDLSEVKNY
SLFPGQIISVQGTNKTGATINASGIYKGIRLPFFSAKRKNQTVNEDPFTV
QIACGPFSTCDETLSYKPLDDLLSTVTKAVPDVLILLGPFVDSKQPLIEK
GEVDDLFEDIFAGCMEKIQRAVHNLSTQVVLVPSQRDVFHEYVYPQPPLI
DPLGGSTDPKKIHMMSDPCTLMINDVCFGLTSTDILFHLGAEEAAAHATR
SDRLGRLADHLLLQQSYYPLHPTHEDVNLDYEAFERHAYMPITPDVLVVP
SDLRYFVKDVEGCLCMNPGRLVKGQTGGTFIKCLMKPKKSSNANKSSVVD
ESVAQIIRL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035644	XLOC_035644	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056573	TCONS_00056573	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016722	DNA_pol_alpha_bsu
IPR007185	DNA_pol_alpha/epsilon_bsu
IPR013627	Pol_alpha_B_N

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003887	DNA-directed DNA polymerase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 266..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..183
IPR016722	DNA polymerase alpha, subunit B	PIRSF	PIRSF018300	DNA_pol_alpha_2	coord: 46..659 e-value: 1.2E-152 score: 507.4
IPR007185	DNA polymerase alpha/epsilon, subunit B	PFAM	PF04042	DNA_pol_E_B	coord: 401..608 e-value: 5.4E-38 score: 130.4
IPR013627	DNA polymerase alpha, subunit B N-terminal	PFAM	PF08418	Pol_alpha_B_N	coord: 70..297 e-value: 1.3E-19 score: 71.0

Blast

[Close]

BLAST of TCONS_00056573-protein vs. Swiss-Prot (Human)
Match: DPOA2 (DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2)

HSP 1 Score: 418.698 bits (1075), Expect = 6.831e-139
Identity = 251/617 (40.68%), Postives = 360/617 (58.35%), Query Frame = 0

Query:   51 EELSTEFGDIGIDIEGNLPVLEKLTGLCKTFKLTAEDITAQWMTFALKATECTVITEETLDDFEKKQLLK--GKKTSNVKKSSAQTPHRKSYTGNNISSLFDEEDTMLGSYATTPESKQSIKRSHITPEQPSNKRFASIDATPISQRFSPASL----STPSLSTPSAKYEARSGKGDVLASFG--QGVDNSTQIQWNGQGIQPHIRLYVDSEEDSLKKPYKHMFQKLQDKADVLNEIINNLAEDMKSSLMLDESESVAQTTEEKAIFSGRVCCDSVGRLNAKSVVLEGSRETSAGQRIPLDLSEVKNYSLFPGQIISVQGTNKTGATINASGIYKGIRLPFFSAKRKNQTVNEDPFTVQIACGPFSTCDETLSYKPLDDLLSTVTKAVPDVLILLGPFVDSKQPLIEKGEVDDLFEDIFAGCMEKIQRAVHNLSTQVVLVPSQRDVFHEYVYPQPPLIDPLGGSTDPKKIHMMSDPCTLMINDVCFGLTSTDILFHLGAEEAAAHATRSDRLGRLADHLLLQQSYYPLHPTHEDVNLDYEAFERHAYMPITPDVLVVPSDLRYFVKDVEGCLCMNPGRLVKGQTGGTFIKCLMKPKKSSNANKSSVVDESVAQIIRL 659
            ++L+ E    G+D E  L  +EKL  LC  +    E +  + + F   +T    +T E L+ FE + L K   K   +  K S     R   +   +  + +EE+ +L SY TTP SK S KR+  TPE P  KR        +S R SP  L    S    +TPS KY +RS +G+V+ SFG  QGV       W+G+G   +I L V    ++L   YK MFQKL D  +VL   I  L  ++K    ++    +    +E     G++ CDS G+LN KSV+LEG RE S+G +IP+DLSE+K YSLFPGQ++ ++G N TG  + A+ +Y+G+ LPF+    ++    +    V +ACGP++T D +++Y PL DL++ +    PDV IL GPF+D+K   +E   +   FEDIF  C+  I     +  + +V VPS RDV HE VYPQPP         D K++  +S+PC+L IN V FGLTSTD+LFHLGAEE ++ +  SDR  R+  H+L Q+SYYPL+P  ED+ +DYE+F  +A +P+TPDVL++PS+LRYFVKDV GC+C+NPGRL KGQ GGTF +  ++   +  A + S       Q++R+
Sbjct:    6 QQLAEELQIFGLDCEEAL--IEKLVELCVQYGQNEEGMVGELIAFC-TSTHKVGLTSEILNSFEHEFLSKRLSKARHSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSY-TTP-SKGSQKRAISTPETPLTKR-------SVSTR-SPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGVS------WSGRGGAGNISLKVLGCPEALTGSYKSMFQKLPDIREVLTCKIEELGSELKEHYKIEAFTPLLAPAQEPVTLLGQIGCDSNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKLYEGVPLPFYQPTEEDADFEQS--MVLVACGPYTTSD-SITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDIFKQCLRTIIEGTRSSGSHLVFVPSLRDVHHEPVYPQPPFSYSDLSREDKKQVQFVSEPCSLSINGVIFGLTSTDLLFHLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDMAIDYESFYVYAQLPVTPDVLIIPSELRYFVKDVLGCVCVNPGRLTKGQVGGTFARLYLRRPAADGAERQSPC--IAVQVVRI 598

The following BLAST results are available for this feature:

BLAST of TCONS_00056573-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056573-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPOA2	6.831e-139	40.68	DNA polymerase alpha subunit B OS=Homo sapiens GN=...	[more]

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TCONS_00056573-protein (polypeptide) - C. hemisphaerica