TCONS_00056165-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056165-protein
Unique Name	TCONS_00056165-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	422

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056165-protein ID=TCONS_00056165-protein|Name=TCONS_00056165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MGKQRKKKNLPAQDEVQDTTGVPRSFVFHRGVVGKTVVNLVNDIKHVMQP
FTALNLKVTKNNVLKDFVHVAGPYGVTHFIILSKTEKAPYLKICRLPRGP
TLTFKVNEYSLMKDVISILKRPKSLDQQFKHPSLAVLNGFSNEEAHTKLM
STVFQNMFPPLKVQKVKLSNIRRCSVFDYDSSTGLVEFRHFHIEAKPTGL
SRGVKKLLKNKIPNLGKLEDISDFMAGGAYLSESEGEEPAESQVTLPQAV
RGRGNMKSSQSAIRLTEMGPRLQLMLLKIEEGVCEGEVMYHKYESKTKKE
MKELKARKVKAKEEKDKRRQEQEGNVARKQQAKEDHKERSLAGMKRKMEE
SGETQEGSSETVEENEKQDTSMSETEEEEQEEVELTKPKKKKRNIPPQPK
SKAKPAGKFSKTKGKKHLKHKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035361	XLOC_035361	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056165	TCONS_00056165	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007109	Brix
IPR004154	Anticodon-bd

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 294..339
None	No IPR available	GENE3D	3.40.50.10480		coord: 22..276 e-value: 5.4E-41 score: 139.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 304..422
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 26..279 e-value: 2.7E-67 score: 239.5
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 36..277 e-value: 3.0E-42 score: 144.8
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 23..285 score: 32.173
IPR004154	Anticodon-binding	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 39..189

Blast

[Close]

BLAST of TCONS_00056165-protein vs. Swiss-Prot (Human)
Match: SSF1 (Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 3.526e-116
Identity = 178/361 (49.31%), Postives = 247/361 (68.42%), Query Frame = 0

Query:    2 GKQRKKKNLPAQDEVQDTTGV---PRSFVFHRGVVGKTVVNLVNDIKHVMQPFTALNLKVTKNNVLKDFVHVAGPYGVTHFIILSKTEKAPYLKICRLPRGPTLTFKVNEYSLMKDVISILKRPKSLDQQFKHPSLAVLNGFSNEEAHTKLMSTVFQNMFPPLKVQKVKLSNIRRCSVFDYDSSTGLVEFRHFHIEAKPTGLSRGVKKLLKNKIPNLGKLEDISDFMAGGAYLSESEGEEPAESQVT-LPQAVRGRGNMKSSQSAIRLTEMGPRLQLMLLKIEEGVCEGEVMYHKYESKTKKEMKELKARKVKAKEEKDKRRQEQEGNVARKQQAKEDHKERSLAGMKRKMEESGETQEGS 358
            G+ R +K   AQ ++++       P SFVF RG  G+ +  L  D++ VM+P TA  L+V K N LKD V VAGP GVTHF+ILSKTE   Y K+ RLP GPTLTF+V +YSL++DV+S L+R +  +QQF HP L VLN F     H KLM+T+FQN+FP + V KV L+ I+RC + DY+  +  ++FRH+ I+  P G SRG+KKLL+ K PN+ +L+DIS+ +A GA LSESE E   +  +T LPQAV GRGNM++ QSA+RLTE+GPR+ L L+K++EGV EG+VM+H + SKT++E++ +   K K    K +R+ +Q  NV RKQ+ +E H+++SL GMK K    G  +E S
Sbjct:    5 GRSRHQKRARAQAQLRNLEAYAANPHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASRGMKKLLQEKFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSFVSKTEEELQAILEAKEKKLRLKAQRQAQQAQNVQRKQEQREAHRKKSLEGMK-KARVGGSDEEAS 364

The following BLAST results are available for this feature:

BLAST of TCONS_00056165-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056165-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SSF1	3.526e-116	49.31	Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PP...	[more]

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TCONS_00056165-protein (polypeptide) - C. hemisphaerica