TCONS_00056030-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056030-protein
Unique NameTCONS_00056030-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056030-protein ID=TCONS_00056030-protein|Name=TCONS_00056030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MSSREMFGGKNADQMKGSENVIDTRPVAAIKLLTLGDSGVGKTSLTIRFV
CGGFENRFIPTIGMDLQEKIMVYHAKNSDGSKQARGQRVHLQLWDTAGQE
RFRSLTTAFFRDAMGFLLMFDLTHEESFVNVRSWLSQLQTHAYCEDPTII
LIGNKTDLEAERQVAEKAARDLADSLGIKYFETSAKTGENVNEAIDALLE
QVMEQMERCVDKATLPPSLANGGERGHKLREVDEAHDDRSGGCAC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035254XLOC_035254Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056030TCONS_00056030Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..175
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 145..158
score: 47.61
coord: 30..51
score: 49.66
coord: 53..69
score: 27.91
coord: 82..104
score: 47.26
coord: 180..202
score: 37.67
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 30..205
e-value: 3.1E-78
score: 275.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 27..205
e-value: 1.1E-30
score: 118.0
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 32..201
e-value: 6.0E-15
score: 65.7
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 35..243
e-value: 6.4E-6
score: 34.6
NoneNo IPR availableGENE3D3.40.50.300coord: 105..203
e-value: 3.2E-35
score: 119.7
NoneNo IPR availableGENE3D3.30.70.1390coord: 28..104
e-value: 1.6E-23
score: 82.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..245
NoneNo IPR availablePROSITEPS51419RABcoord: 18..243
score: 30.499
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 31..203
e-value: 1.5E-54
score: 183.8
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 30..197
e-value: 8.5E-24
score: 82.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 30..206

Blast
[Close]
BLAST of TCONS_00056030-protein vs. Swiss-Prot (Human)
Match: RB27A (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 1.702e-87
Identity = 126/218 (57.80%), Postives = 162/218 (74.31%), Query Frame = 0 
Query:   30 IKLLTLGDSGVGKTSLTIRFVCGGFENRFIPTIGMDLQEKIMVYHAKNSDGSKQARGQRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTHEESFVNVRSWLSQLQTHAYCEDPTIILIGNKTDLEAERQVAEKAARDLADSLGIKYFETSAKTGENVNEAIDALLEQVMEQMERCVDKATLPPSL--ANGGERGHKLREVDEAHDDRSGGCAC 245
            IK L LGDSGVGKTS+  ++  G F ++FI T+G+D +EK +VY A   DG+   RGQR+HLQLWDTAGQERFRSLTTAFFRDAMGFLL+FDLT+E+SF+NVR+W+SQLQ HAYCE+P I+L GNK+DLE +R V E+ A  LA+  GI YFETSA  G N+++AI+ LL+ +M++MERCVDK+ +P  +  +NG     +L E  E      G C C
Sbjct:   10 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGAT-GRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKE-----KGACGC 221
The following BLAST results are available for this feature:
BLAST of TCONS_00056030-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB27A1.702e-8757.80Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]
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