TCONS_00055563-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055563-protein
Unique NameTCONS_00055563-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055563-protein ID=TCONS_00055563-protein|Name=TCONS_00055563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MAAPAVEDIPKHSVHTLVFRSIKRSHDMFLSDHAHPIPLDKKAEEIKRKF
KIQSEYANIQKKQQPVGSVVRDKTNSFPLALEGPKGQDQMLSITGPNSFP
STPGVSLTEDIASSHRQPSAAGVSHVRSLQPISQSQIDANKHAHSIQDIT
NKALASGGSERIRPNNKQLMPTTGESKVPFSQGIVPRKGTTMPKPRWHAP
WKLMRVVSGHTGWVRCVALEPANQWFCTGSADRTIKIWDLATSKLKLSLT
GHISTVRGLVVSPRHPYLFSCGEDKTVKCWDLEYNKVTRSYHGHLSACYG
IDIHPTVDVIVTVGRDSTARVWDIRTKAAVHSLTGHTNTIADVKCQGVEP
QIITGSHDCTVRYWDLVAGKSQATLTNHKKSIRSLVLHPTQYTMASGSAD
NIKQWKFPDGNFIQNLSGHNSILNCMAINSDGVLVSGGDNGSMHLWDWKT
GYNFQRTQALVQPGSLDSESGIFSMTFDLSGTRLITTEADKTIKIYKEDD
EASEESHPINWKPDIIKRKKY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034944XLOC_034944Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055563TCONS_00055563Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 226..240
score: 38.68
coord: 268..282
score: 38.58
coord: 352..366
score: 35.85
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 409..447
e-value: 8.8E-7
score: 38.5
coord: 459..497
e-value: 2.0
score: 15.1
coord: 242..281
e-value: 4.3E-8
score: 42.9
coord: 326..365
e-value: 1.5E-5
score: 34.4
coord: 368..406
e-value: 6.6E-4
score: 29.0
coord: 284..323
e-value: 2.1E-5
score: 34.0
coord: 200..239
e-value: 1.9E-10
score: 50.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 411..447
e-value: 3.0E-5
score: 24.6
coord: 247..281
e-value: 2.0E-6
score: 28.3
coord: 201..239
e-value: 2.1E-9
score: 37.8
coord: 369..405
e-value: 0.24
score: 12.3
coord: 287..323
e-value: 0.0098
score: 16.6
coord: 330..365
e-value: 7.2E-4
score: 20.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 207..248
score: 15.354
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 291..332
score: 12.915
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 249..290
score: 13.349
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 333..374
score: 12.179
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 416..456
score: 11.444
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 359..415
e-value: 4.9E-16
score: 58.3
NoneNo IPR availableGENE3D2.40.50.140coord: 416..447
e-value: 1.5E-7
score: 30.5
coord: 172..235
e-value: 4.1E-12
score: 45.0
coord: 287..330
e-value: 1.6E-13
score: 49.5
NoneNo IPR availableGENE3D1.10.10.670coord: 236..286
e-value: 2.8E-19
score: 68.4
coord: 448..510
e-value: 1.1E-6
score: 27.9
NoneNo IPR availableGENE3D2.40.10.120coord: 331..358
e-value: 0.28
score: 10.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..192
NoneNo IPR availableCDDcd00200WD40coord: 203..497
e-value: 1.80477E-84
score: 264.582
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 310..324
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 207..506
score: 56.764
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 196..497

Blast
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BLAST of TCONS_00055563-protein vs. Swiss-Prot (Human)
Match: PLRG1 (Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1)

HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0
Identity = 313/532 (58.83%), Postives = 397/532 (74.62%), Query Frame = 0 
Query:    6 VEDIPKHSVHTLVFRSIKRSHDMFLSDHAHPIPLDKKAEEIKRKFKIQSEYANIQKKQQPVGSVVRDKTNSFPLALEGPK---------------GQDQMLSITGPNSFPSTPGVSLTEDIASSHRQPSAAGVSHVRSLQPISQSQIDANKHAHSIQDITNKALASGGSERIRPNN-KQLMPTTGESKVPFSQGIVPRKGTTMPKPRWHAPWKLMRVVSGHTGWVRCVALEPANQWFCTGSADRTIKIWDLATSKLKLSLTGHISTVRGLVVSPRHPYLFSCGEDKTVKCWDLEYNKVTRSYHGHLSACYGIDIHPTVDVIVTVGRDSTARVWDIRTKAAVHSLTGHTNTIADVKCQGVEPQIITGSHDCTVRYWDLVAGKSQATLTNHKKSIRSLVLHPTQYTMASGSADNIKQWKFPDGNFIQNLSGHNSILNCMAINSDGVLVSGGDNGSMHLWDWKTGYNFQRTQALVQPGSLDSESGIFSMTFDLSGTRLITTEADKTIKIYKEDDEASEESHPINWKPDIIKRKKY 521
            VE++ KHSVHTLVFRS+KR+HDMF++D+  P+PLD+++ + K   K+++EY          G V+   T+   L  +GP+               GQ+    + G + +P  PGV+LT D     R PS +    +    P+ Q++ DAN+ A S  +  +     G S+R +P     ++  TG +K   +  ++ +K  TMPKP+WH PWKL RV+SGH GWVRC+A+EP NQWF TGSADRTIKIWDLA+ KLKLSLTGHISTVRG++VS R PYLFSCGEDK VKCWDLEYNKV R YHGHLSA YG+D+HPT+DV+VT  RDSTAR+WD+RTKA+VH+L+GHTN +A V+CQ  EPQIITGSHD T+R WDLVAGK++ TLTNHKKS+R++VLHP  YT ASGS DNIKQWKFPDG+FIQNLSGHN+I+N + +NSDGVLVSG DNG+MHLWDW+TGYNFQR  A VQPGSLDSESGIF+  FD S +RL+T EADKTIK+Y+EDD A+EE+HP++WKP+IIKRK++
Sbjct:    2 VEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEY----------GPVLHMPTSKENLKEKGPQNATDSYVHKQYPANQGQEVEYFVAGTHPYPPGPGVALTAD-TKIQRMPSESAAQSLAVALPL-QTKADANRTAPSGSEYRH----PGASDRPQPTAMNSIVMETGNTK---NSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTATEETHPVSWKPEIIKRKRF 514
The following BLAST results are available for this feature:
BLAST of TCONS_00055563-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLRG10.000e+058.83Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 P... [more]
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