TCONS_00055557-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055557-protein
Unique NameTCONS_00055557-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055557-protein ID=TCONS_00055557-protein|Name=TCONS_00055557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
WQPGHFKKGRIWPKFGTLVPWVNIWGCFFHFLKXHKADYMRDEIERGHGY
VECVVNYIEYLVGLEQSTSKMSSSEGLQEIFQITSDSLKLVEYLVSTYGR
KIDPLINTYDKRFLFLCLRLQSILNLKLYKMKKEQTKKNSKILSEYYRQY
KPMNAIGRSPYSKPNQRGSTGTPSPSSPISDPSPGGSVASTGSAGSNSSS
NGVTIPCDMHEKSYQYLSNTKYLVNGHRLWDDSESLTNQVQGFIQSLSKK
AGILTMQSTTLHIVDFTRQGLLIIQESRKAAVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034942XLOC_034942Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055557TCONS_00055557Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007797TF_AF4/FMR2
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007797Transcription factor AF4/FMR2PFAMPF05110AF-4coord: 35..271
e-value: 1.5E-42
score: 145.9

Blast
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BLAST of TCONS_00055557-protein vs. Swiss-Prot (Human)
Match: AFF4 (AF4/FMR2 family member 4 OS=Homo sapiens GN=AFF4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.379e-22
Identity = 76/257 (29.57%), Postives = 131/257 (50.97%), Query Frame = 0 
Query:   30 HFLKX-----HKADYMRDEIERGHGYVECVVNYIEYLVGLEQSTSKMSSSEGLQEIFQITSDSLKLVEYLVSTYGRKIDPLINTYDKRFLFLCLRLQSILNLKLYKMKKEQTKKNSKILSEYYRQYKPMNAIGRSPYSKPN-QRGSTGTPSPSSPISDPSPGGSVASTGSAGSNSSSNGVTIPCDMHEKSYQYLSNTKYLVNGHRLWDDSESLTNQVQGFIQSLSKKAGILTMQSTTL-HIVDFTRQGLLIIQESRK 279
            H+L+      H AD + D  E+   Y++ VV++IE    LE++  +  S       F + S+++ L++Y +      + P     DKR   LCLR +S+L L+L+K+KKE   K SK L+E+ +     N+   S    P     + G PSP SP   P   G+ +S  ++ +++S + VTIP  +H+ +  Y+  T   +    +WD +E L+ + + F   L K  G L   ++ +  +V +TRQGL  +++  K
Sbjct:  917 HYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECGNALEKNAQESKSP------FPMYSETVDLIKYTMKLKNY-LAPDATAADKRLTVLCLRCESLLYLRLFKLKKENALKYSKTLTEHLK-----NSYNNSQAPSPGLGSKAVGMPSPVSPKLSPGNSGNYSSG-ASSASASGSSVTIPQKIHQMAASYVQVTSNFLYATEIWDQAEQLSKEQKEFFAELDKVMGPLIFNASIMTDLVRYTRQGLHWLRQDAK 1160
The following BLAST results are available for this feature:
BLAST of TCONS_00055557-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AFF45.379e-2229.57AF4/FMR2 family member 4 OS=Homo sapiens GN=AFF4 P... [more]
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