TCONS_00055371-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055371-protein
Unique Name	TCONS_00055371-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	875

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055371-protein ID=TCONS_00055371-protein|Name=TCONS_00055371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=875bp
MLSTVDALGSSDPFNMMVKDMPDFEKPALKKSLFERLLNAYVEEKKQQQE
KGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYK
LPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRSTQ
KNFDTTYILLKPTSQTIVRDVNSLMSDPKWSNEDKAKLESQLVLAMQPRL
CLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPS
PPCLKLLDFIKQNKDKRSSNSFHKLSRATQHTDMWKQRQLNLSVPSKIDV
TSHAKLMELPKYTTDYTPEKIQEIILEGEKTNNRSYYCRVTIQRRGSTGE
YIGDLYLEEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEG
RKSVKISTFVANQAQRNQQQQQQQAQNSNNASQQAKTQAQQQQQQTAQIL
QQAAHQAATQKIIVSSVPTSTTQMTTHTIVNQNRTFTVAQNPVISHGGNT
YILASSALQQSLNLGSNVVPMSLSRNPYIVNSSGNLQQAVSTKTNQSPSK
IIGASNENAQLTTAYIQSVSGATIGGTSHGQLTAVPIAVQGNNVSLVPGN
QFIAAKASPQTIRPAGATGQIMLQVPGNLVPLSQMTRVAGGPQKGQIPGA
GMASVMVHGKQVMVQGGAMIQGQATFIPNQAPLIPGLQGGQTAIIQGGSI
FVQGQPGQTQGQTVMIQGQPGQHQTGQNTLIQGQALQGQPVFIQGQPNGQ
TQVVQGQAIMLQGNQGGHQGQVQLITTSTSSGGQQLQIVPQIQKQVITSS
AGRTQSSTALSALTSQVNLIPMQQSGQQYQPIVQFTTSAQPRPVQQRRKS
ASQPNAAGGGRKRAPAPTKPSPQSQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034875	XLOC_034875	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055371	TCONS_00055371	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021950	Spt20

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0000124	SAGA complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000124	SAGA complex
molecular_function	GO:0003712	transcription cofactor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 411..445
None	No IPR available	GENE3D	1.10.510.10		coord: 70..463 e-value: 1.0E-4 score: 21.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..439
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 836..875
IPR021950	Transcription factor Spt20	PFAM	PF12090	Spt20	coord: 155..209 e-value: 2.2E-13 score: 50.3 coord: 61..154 e-value: 2.0E-17 score: 63.5

Blast

[Close]

BLAST of TCONS_00055371-protein vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 5.172e-85
Identity = 155/396 (39.14%), Postives = 245/396 (61.87%), Query Frame = 0

Query:   30 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRSTQKN---FDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTPEKIQEIILEGEKTNNRSYYCRVTIQR---RGSTGEYIGD-LYL----------EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 406
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P     +    +  ++  + C    Q    + +  + +GD LY           E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQP----TVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423

The following BLAST results are available for this feature:

BLAST of TCONS_00055371-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055371-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SP20H	5.172e-85	39.14	Transcription factor SPT20 homolog OS=Homo sapiens...	[more]

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TCONS_00055371-protein (polypeptide) - C. hemisphaerica