TCONS_00055064-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055064-protein
Unique NameTCONS_00055064-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055064-protein ID=TCONS_00055064-protein|Name=TCONS_00055064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp
RNKNQNKQKNQTFKHQHRMASSHLHHSSATYPVVPGSQDSATHILNHSAP
NMMTSSNRGNYLPEHLPPHNDGYMMPASKRQRFDNQTTAAATTPNMDSTQ
CHPPTSHMHLSQNIPAQSYPQIHPSLLTPPETHTPYSYCTYGGNGGGPLD
EETSQTHGALAVSSYPNMEEVSAARYENPVDARYSNPTQALSREQMQRYL
RERDHETVVVLHARVAQKSYGNEKRFFCPPPSLYLKGKGWNKRRDRHVAE
SKTNEATNNPTTSSSSSTNNNSNNNNDVNNCLYPHALVYIGPSEHPLMQQ
LTFEEKVDQGFCSAKTLFISDSDKRKSFIICTRLMYPNGKSLGVFESRRI
KVISKPSKKKQSYKNTELCISSGTTVALFNRLRSQTVSTRYLNIEDTDDN
RSNFRASSQQWGAFTIHLLDDEEEEGEEFSVRDGFIHYGQTVKLVCVRTQ
LALPRLVIRKVDKQQVSIDADDPVSQLHKVAFYFKDSERMYLCLSQEKII
QFQATQCPKDPKKEMITDGASWTIISTDKAEYSFCEGAGPVSDPVTPVPT
VRAMQLNGGGDVAMIELKGENFQAVMKVWFADVEADTYYRCSECIIAVVP
DIRSFPEGREDPRTKLTVPVSLVRHDGVIYPTGLNFAYTPEPLELIEMAM
RSREMYHQPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034691XLOC_034691Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055064TCONS_00055064Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015351LAG1_DNA-bd
IPR015350Beta-trefoil_DNA-bd_dom
IPR013783Ig-like_fold
IPR008967p53-like_TF_DNA-bd
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0000978RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015351LAG1, DNA bindingSMARTSM01267LAG1_DNAbind_2coord: 207..367
e-value: 2.0E-63
score: 226.7
IPR015351LAG1, DNA bindingGENE3D2.60.40.1450coord: 180..373
e-value: 6.1E-61
score: 205.4
IPR015351LAG1, DNA bindingPFAMPF09271LAG1-DNAbindcoord: 208..367
e-value: 2.1E-45
score: 154.9
IPR015350Beta-trefoil DNA-binding domainSMARTSM01268BTD_2coord: 368..522
e-value: 1.9E-82
score: 289.9
IPR015350Beta-trefoil DNA-binding domainPFAMPF09270BTDcoord: 368..522
e-value: 1.9E-67
score: 226.2
IPR015350Beta-trefoil DNA-binding domainSUPERFAMILY110217DNA-binding protein LAG-1 (CSL)coord: 365..527
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 549..642
e-value: 2.4E-8
score: 33.8
NoneNo IPR availableGENE3D2.80.10.50coord: 374..526
e-value: 1.4E-64
score: 216.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..277
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 190..367
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 528..640

Blast
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BLAST of TCONS_00055064-protein vs. Swiss-Prot (Human)
Match: SUH (Recombining binding protein suppressor of hairless OS=Homo sapiens GN=RBPJ PE=1 SV=3)

HSP 1 Score: 579.326 bits (1492), Expect = 0.000e+0
Identity = 282/456 (61.84%), Postives = 338/456 (74.12%), Query Frame = 0 
Query:  187 PTQALSREQMQRYLRERDHETVVVLHARVAQKSYGNEKRFFCPPPSLYLKGKGWNKRRDRHVAESKTNEATNNPTTSSSSSTNNNSNNNNDVNNCLYPHALVYIGPSEHPLMQQLTFEEKVDQGFCSAKTLFISDSDKRKSFIICTRLMYPNGKSLGVFESRRIKVISKPSKKKQSYKNTELCISSGTTVALFNRLRSQTVSTRYLNIEDTDDNRSNFRASSQQWGAFTIHLLDDEEEEGEEFSVRDGFIHYGQTVKLVCVRTQLALPRLVIRKVDKQQVSIDADDPVSQLHKVAFYFKDSERMYLCLSQEKIIQFQATQCPKDPKKEMITDGASWTIISTDKAEYSFCEGAGPVSDPVTPVPTVRAMQLNGGGDVAMIELKGENFQAVMKVWFADVEADTYYRCSECIIAVVPDIRSFPEGREDPRTKLTVPVSLVRHDGVIYPTGLNFAYTPEP 642
            P + L+RE M+ YL+ER  +TV++LHA+VAQKSYGNEKRFFCPPP +YL G GW K++++   +  + + +                          P A + IG S+   MQQL  E K    +C+AKTL+ISDSDKRK F++  ++ Y N   +GVF S+RIKVISKPSKKKQS KN +LCI+SGT VALFNRLRSQTVSTRYL++E       NF ASSQQWGAF IHLLDD+E EGEEF+VRDG+IHYGQTVKLVC  T +ALPRL+IRKVDKQ   +DADDPVSQLHK AFY KD+ERMYLCLSQE+IIQFQAT CPK+P KEMI DGASWTIISTDKAEY+F EG GPV  PVTPVP V ++QLNGGGDVAM+EL G+NF   ++VWF DVEA+T YRC E ++ VVPDI +F EG    R  + VPV+LVR+DG+IY T L F YTPEP
Sbjct:   27 PPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQ-------------------------PCAFIGIGNSDQE-MQQLNLEGK---NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEG-----GNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEP 448
The following BLAST results are available for this feature:
BLAST of TCONS_00055064-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUH0.000e+061.84Recombining binding protein suppressor of hairless... [more]
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