TCONS_00054444-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054444-protein
Unique Name	TCONS_00054444-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	329

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054444-protein ID=TCONS_00054444-protein|Name=TCONS_00054444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MDHDAFLWFVIIPFTVYLIQKWCKKDNELNISENRLDNKLVIVTGANSGI
GYEVALDCAKRGASVILACRNETLALEAQRRIIEMTGNRAIKFKTLDLAS
FQSIHSFVGEVSKEEESIYCLVNNAGLFWVPYMETKDGIESNFGVNHLGH
FLLTMLLLPLLTKEKSRVVFVGSLMYMFGKIHFNDLNFVKRGYDFVAAYA
DSKLANILTTRLLAKKLKQTSIKFYCADPGIVATNIGKGSILMGSFLYNY
ILKPILQFFVFRTAKEGAQAVIYCVCSEEIVHDSGHFYTISGREKPWAAG
RDDKAAEILFNKSMELCKLSFASFSNFIE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034308	XLOC_034308	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054444	TCONS_00054444	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 220..237 score: 23.63 coord: 116..127 score: 44.25 coord: 160..176 score: 19.29 coord: 40..57 score: 41.57 coord: 199..218 score: 32.13
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 39..238 e-value: 1.4E-28 score: 99.6
None	No IPR available	GENE3D	3.40.50.720		coord: 14..240 e-value: 1.8E-49 score: 167.5
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 36..297

Blast

[Close]

BLAST of TCONS_00054444-protein vs. Swiss-Prot (Human)
Match: RDH13 (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.898e-55
Identity = 111/293 (37.88%), Postives = 167/293 (57.00%), Query Frame = 0

Query:   32 SENRLDNKLVIVTGANSGIGYEVALDCAKRGASVILACRNETLALEAQRRIIEMTGNRAIKFKTLDLASFQSIHSFVGEVSKEEESIYCLVNNAGLFWVPYMETKDGIESNFGVNHLGHFLLTMLLLPLL-TKEKSRVVFVGSLMYMFGKIHFNDLNFVKRGYDFVAAYADSKLANILTTRLLAKKLKQTSIKFYCADPGIVATNIGKGSILMGSFLYNYILKPILQFFVFRTAKEGAQAVIYCVCSEEIVHDSGHFYTISGREKPWAAGRDDKAAEILFNKSMELCKLSFAS 323
            S+  +  K VIVTGAN+GIG + AL+ A+RG ++ILACR+      A + I   T N  +  + LDLAS +SI  F  ++ +EEE +  L+NNAG+   P+  T+DG E  FGVNHLGHFLLT LLL  L     SR++ + SL ++ G I F+DLN+  R Y+  AAY  SKLA +L T+ L+++L+ + +      PG+  T +G+ + + GS   +  L PI    V ++ +  AQ   Y   +EE+   SG ++    ++ P     D++ A  L+ +S  L  L   S
Sbjct:   32 SKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQSKLAIVLFTKELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWLLV-KSPELAAQPSTYLAVAEELADVSGKYFDGLKQKAPAPEAEDEEVARRLWAESARLVGLEAPS 323

The following BLAST results are available for this feature:

BLAST of TCONS_00054444-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054444-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RDH13	1.898e-55	37.88	Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ...	[more]

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TCONS_00054444-protein (polypeptide) - C. hemisphaerica