TCONS_00054334-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054334-protein
Unique Name	TCONS_00054334-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	685

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054334-protein ID=TCONS_00054334-protein|Name=TCONS_00054334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp
MSSRKRNLVGSDDSDDSSDDSDFGEGLKSISKKAKVSPKQKPQEDSSDSS
SSSDDDGSDDEWTLDNQNDGNKKSKKKATTKKKADKEPPAKKKQVAPIFS
DDDEEEDGDGDGEENEKKEEDQEDGQVSSSSSSSSSDNDSDDEQFTGFDE
NLGDDLMGDDKDRQRLDQMTEKERELELYNRQERLEAMKIRKELGQKLQA
ERKKQSKKKDKEKKHKSREKDDSEEEAGEIKDDDDEDDLDNDDQYSNTIA
SRKSERKKGGDDSKKTALDELKQKRIQKIEKEKMEQSKKELLKTTDVWSD
DDDDDKGSGDDSDESGSPMYGSDEEDDKDERTLIEAKEELEEVRLSRHKL
EQWVHTPFFGQVLTGCFVRIGIGNHEGRAVYRVAEIIDVVETPKIYTLGK
TRTNKGVKIRHGMQERTFRMEYVSNQGFTDSEFQKWKEEMSMRELPLPNM
KMIKSKKAEIESSKTYTYKEDDIEAIVKEKDKFRKNPHNYAVKKNRLLRE
KEVAEQTSDFDRLRKVNEELDALEERAEQLDKKRSGALSNVSYINERNRK
KNVYDVEKAAIEESKLNKKQKDDPFTRRKTLPKMISKDDNSPSEGSSKQS
QDSVDGKSSKNPSQEKDDETNKNDDEKSEEADLFSAHDFDVQIDVDIPGS
RNISLTPKPLMAARELGPPRRSLNLDEYKRRKGLI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034260	XLOC_034260	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054334	TCONS_00054334	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004343	Plus-3_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 510..540
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 565..640
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 663..685
IPR004343	Plus-3 domain	SMART	SM00719	rtf1	coord: 334..442 e-value: 1.8E-36 score: 137.2
IPR004343	Plus-3 domain	PFAM	PF03126	Plus-3	coord: 339..440 e-value: 2.5E-33 score: 114.7
IPR004343	Plus-3 domain	PROSITE	PS51360	PLUS3	coord: 334..465 score: 37.377
IPR004343	Plus-3 domain	SUPERFAMILY	159042	Plus3-like	coord: 338..462

Blast

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BLAST of TCONS_00054334-protein vs. Swiss-Prot (Human)
Match: RTF1 (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens GN=RTF1 PE=1 SV=4)

HSP 1 Score: 374.4 bits (960), Expect = 5.250e-120
Identity = 232/552 (42.03%), Postives = 345/552 (62.50%), Query Frame = 0

Query:  148 FDENLGDDLMGDDKDRQRLDQMTEKERELELYNRQERLEAMKIRKELGQKLQAERKKQSKKKDKEKKHKSREKDDSEEEAGEIKDDDDEDDLDNDDQYSNTIASRKSERKKGGDDSKKTALDELKQKRIQKIEKEKMEQSKKELLKTTDVWSDDDDDDKGSGDDSDESGSPMYGSDEEDDKDERTL-----IEAKEELEEVRLSRHKLEQWVHTPFFGQVLTGCFVRIGIGNHEGRAVYRVAEIIDVVETPKIYTLGKTRTNKGVKIRHGMQERTFRMEYVSNQGFTDSEFQKWKEEMSMRELPLPNMKMIKSKKAEIESSKTYTYKEDDIEAIVKEKDKFRKNPHNYAVKKNRLLREKEVAEQTSDFDRLRKVNEELDALEERAEQLDKKRSGALSNVSYINERNRKKNVYDVEKAAIEESKLNKKQKDDPFTRRKTLPKMISKDDNSPSEGSSKQSQDSVDGKSSKNP--------SQEKDDETN-KNDDEKSEEADLFSAHDFDVQIDVDIPGSRNISLTPKPLMAARELGPPRRSLNLDEYKRRKGLI 685
            F +  G+DLMGD++DR RL+QMTEKERE EL+NR E+ E +K R E+ +KL+  +KK+ K+K K+++ +  +K  ++ +  ++   + E     D++                 D K  A++ELK +R ++  +     +KK+ LKT++V+SDD+++++          S    S +E+++ E        +   EEL  VRLSRHKLE+W H PFF + +TGCFVRIGIGNH  + VYRVAEI  VVET K+Y LG TRTNKG+++RHG  +R FR+E+VSNQ FT+SEF KWKE M    + LP +  I  K+  I+ +  Y + + DIE IVKEK++FRK P NYA+KK +LL+EK +AE   D D+ +++ ++L+ LEERAE LD++R+  +S +SYIN+RNR+ N+ + EKA + ES   K Q+ DPFTRR+  P ++S +   P+  ++  +Q +    S   P         Q KD + N K+  + SE  DLF  HDFDV+ID+ +P S + +L         + G PRRSLNL++YK+R+GLI
Sbjct:  178 FHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKL----------------DKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVS-NSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSE--DLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI 710

The following BLAST results are available for this feature:

BLAST of TCONS_00054334-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054334-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RTF1	5.250e-120	42.03	RNA polymerase-associated protein RTF1 homolog OS=...	[more]

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TCONS_00054334-protein (polypeptide) - C. hemisphaerica