TCONS_00054090-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054090-protein
Unique NameTCONS_00054090-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054090-protein ID=TCONS_00054090-protein|Name=TCONS_00054090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp
MERNELQDFRQKWLLDLHQSQSTTQQKKDPTVKHVYHEEQKPTYSKSRQD
VEITSEKPFEVIPRESTTSTKISKEYEAFAIANKYLNTSIEENKPNSRKR
KYSNQDDGNLEACSSKRKESLVDLLIADIDEITCIPFFEMELPKEIAVKV
FTYLNVRDLSQCCRASKQWKAIAEDDLIWFNIYKQLKMNGEDLSMIDGYE
WKRRVKDAVLKKRHVQQKWKERFCEVYDLEYEKGGILCTTCCYEDDVIVA
YLDGSLKIWNLMDRSFGHPLKERHTRDEDIITDVCCDVKMSKTLCVASFQ
NGDVMVWRRDNSLSARLVFMTNLASSETWKIGISPCSKYISLNSGPRLKI
LKEANEEETEQHDVGVDHTWNWSTHYEYTFNEKILDLAFIDKVLVLNLRH
KILTIETQNKTHIELDQIAGATFSCLRYSASYLVVAVNGFGYSSLGGFRI
RKYCLSTLKELCNMHGSQGRVQCLGYGDKSNTDCLDDQVIVACSNRTIKI
YQMTDGKVLSFIPKIGSDVTMLQFDEWKILSGHQDGSIVLWDRHLGTMYW
KNTMKHPVKFCHFTDYLLTTINIPIEKFPRNSNWYADDLIQHRKYRGSIR
VMNFTKDILHGGSLSKEFHADYDNITGYDYNIELIAPYDNVEALNLPKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034139XLOC_034139Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054090TCONS_00054090Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 142..182
e-value: 1.9E-6
score: 37.4
IPR001810F-box domainPFAMPF12937F-box-likecoord: 141..183
e-value: 8.1E-11
score: 41.6
IPR001810F-box domainPROSITEPS50181FBOXcoord: 136..182
score: 13.101
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 141..185
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 457..502
e-value: 2.0
score: 15.1
coord: 269..308
e-value: 140.0
score: 3.4
coord: 505..542
e-value: 2.0
score: 15.1
coord: 222..260
e-value: 20.0
score: 8.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 225..369
e-value: 1.0E-6
score: 27.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 370..571
e-value: 1.4E-13
score: 49.9
NoneNo IPR availableGENE3D1.20.1280.50coord: 135..224
e-value: 9.5E-12
score: 44.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..52
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 232..340
coord: 373..555

Blast
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BLAST of TCONS_00054090-protein vs. Swiss-Prot (Human)
Match: FBXW8 (F-box/WD repeat-containing protein 8 OS=Homo sapiens GN=FBXW8 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.376e-48
Identity = 133/579 (22.97%), Postives = 254/579 (43.87%), Query Frame = 0 
Query:   80 AIANKYLNTSIEENKPNSRKRKYSNQDDGNLEACSSKRK-----ESLVDLLIADIDEITCIPFFEMELPKEIAVKVFTYLNVRDLSQCCRASKQWKAIAEDDLIWFNIYKQLKMNGEDLSMIDGYEWKRRVKDAVLKKRHVQQKWKERFCEVYDLEYEKGGILCTTCCYEDDVIVAYLDGSLKIWNLMDRSFGHP-LKERHTRDEDIITDVCCDVKMSKTLCVASFQNGDVMVWRRDNSLSARLVFMTNLASSETWKIGISPCSKYISLNSGPRLKILKEANEEETEQHDVGVD-------HTWNWSTHYEYTFNEKILDLAFIDKV----LVLNLRHKILTIETQNKTHIELDQIAGATFSCLRYSASYLVVAVNGFGYSSLGGFRIRKYCLSTLKELCNMHGSQGRVQCLGYGDKSNTDCLDDQVIVACSNRTIKIYQMTDGKVLSFIPKIGSDVTMLQFDEWKILSGHQDGSIVLWDRHLGTMYWKNTMKHPVKFCHFTDYLLTTINIPIEKFPRNSNWYADDLIQHRKYRGSIRVMNFTKDILHGGSLSKEFHADYDNITGYDYNIELIAPYDNV 641
            A+A + L  +     P +R  +   QD  +       R+     E LVD LI D++E+  +PFF+++LP E+A+ +F YL+ ++L +C + SK WK IAED+++W+ + +Q + +  D S+ D   WK   ++   K+  ++  WK R   V +LE+    +LC    ++  VI  Y  G +++W+     +  P L+     DE  +      V+++ +L VA++++G + +W                      + G  P  ++       R++ L  + ++ T       D           W    E+   + +  L  + +     + +     ++ +     +   L    G   +CL  SA+ +   V G G+   G  +I  Y L   + L  +        C+   D        + ++    +  ++I+ +  G +   +      V+ +Q D+WKI+SG ++G + +WD  +    W+    HPV+   F+ + L T N+P +   RN++   D    HR++RG IR   F  D L   S      +  D +  + Y++ L  PY++V
Sbjct:   54 ALAQRLLEGA--GRPPAARATRAEGQDVASRSRSPLAREGAGGGEQLVDQLIRDLNEMNDVPFFDIQLPYELAINIFQYLDRKELGRCAQVSKTWKVIAEDEVLWYRLCQQ-EGHLPDSSISDYSCWKLIFQECRAKEHMLRTNWKNRKGAVSELEHVPDTVLCDVHSHDGVVIAGYTSGDVRVWDTRTWDYVAPFLESEDEEDEPGMQPNVSFVRINSSLAVAAYEDGFLNIW--------------------DLRTGKYPVHRF---EHDARIQALALSQDDATVATASAFDVVMLSPNEEGYWQIAAEFEVPKLVQYLEIVPETRRYPVAVAAAGDLMYLLKAEDSARTLLYAHGPPVTCLDVSANQVAFGVQGLGWVYEGS-KILVYSLEAGRRLLKLGNVLRDFTCVNLSDSP-----PNLMVSGNMDGRVRIHDLRSGNIALSLSAHQLRVSAVQMDDWKIVSGGEEGLVSVWDYRMNQKLWEVYSGHPVQHISFSSHSLITANVPYQTVMRNAD--LDSFTTHRRHRGLIRAYEFAVDQLAFQSPLPVCRSSCDAMATHYYDLALAFPYNHV 598
The following BLAST results are available for this feature:
BLAST of TCONS_00054090-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXW82.376e-4822.97F-box/WD repeat-containing protein 8 OS=Homo sapie... [more]
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