TCONS_00053923-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053923-protein
Unique NameTCONS_00053923-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053923-protein ID=TCONS_00053923-protein|Name=TCONS_00053923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
MSKDLDLVILKKVDTDGCIDTYKLSKELEQDHQLFVGAVKRLQSLGEIIS
ANLEQSERWILTKEGLLMAENGSHEANLFNSIPPETGLLQSEMQNLPLGK
NAKIGFSKAMTEGWVRIDKTAEGGPRIFRKVESISDHVNENLVAIQNGQK
VEDGKINDLKKRKLITKEIIKSYSVKKGPAFTLTIEKPEADLTTDLLMSG
AWKTKTFKDYNFDALGIPPTCGHLHPLLKVRTQYRQIFLEMGFTEMPTNN
FVESSFWNFDALFQPQQHPARDAHDTFFLSAPKEAKLQEMPEEYIEKVKT
IHSSGGHGSQGYQYDWTIDEAKKNLLRTHTTAVSTRMLYKLAKRERFTPA
KYFSIDRVFRNESLDATHLAEFHQIEGVVADRDLSLGHLIGILHEFFRKL
GIEKLRFKPAFNPYTEPSMEIFSYHEGLKKWVEIGNSGIFRPEMLLPMGF
PKNVSVIAWGLSLERPTMIKYGISNIRDLIGHKIDLEMVQKNPICRLDES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034044XLOC_034044Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053923TCONS_00053923Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004529Phe-tRNA-synth_IIc_asu
IPR002319Phenylalanyl-tRNA_Synthase
IPR006195aa-tRNA-synth_II
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004826phenylalanine-tRNA ligase activity
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0000049tRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006432phenylalanyl-tRNA aminoacylation
GO:0043039tRNA aminoacylation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
biological_process GO:0043039 tRNA aminoacylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0000049 tRNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.930.10coord: 176..500
e-value: 1.4E-94
score: 316.3
NoneNo IPR availableCDDcd00496PheRS_alpha_corecoord: 225..485
e-value: 5.94583E-111
score: 329.892
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 209..282
coord: 309..485
IPR004529Phenylalanyl-tRNA synthetase, class IIc, alpha subunitTIGRFAMTIGR00468TIGR00468coord: 157..485
e-value: 4.4E-107
score: 356.0
IPR002319Phenylalanyl-tRNA synthetasePFAMPF01409tRNA-synt_2dcoord: 210..489
e-value: 2.8E-90
score: 302.0
IPR006195Aminoacyl-tRNA synthetase, class IIPROSITEPS50862AA_TRNA_LIGASE_IIcoord: 229..493
score: 20.125

Blast
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BLAST of TCONS_00053923-protein vs. Swiss-Prot (Human)
Match: SYFA (Phenylalanine--tRNA ligase alpha subunit OS=Homo sapiens GN=FARSA PE=1 SV=3)

HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 312/494 (63.16%), Postives = 401/494 (81.17%), Query Frame = 0 
Query:    8 VILKKVD-TDGCIDTYKLSKELEQDHQLFVGAVKRLQSLGEIISANLEQSERWILTKEGLLMAENGSHEANLFNSIPPETGLLQSEMQNLPLGKNAKIGFSKAMTEGWVRIDKTAEGGPRIFRKVESISDHVNENLVAIQNGQ--KVEDGKINDLKKRKLITKEIIKSYSVKKGPAFTLTIEKPEADLTTDLLMSGAWKTKTFKDYNFDALGIPPTCGHLHPLLKVRTQYRQIFLEMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFLSAPKEAKLQEMPEEYIEKVKTIHSSGGHGSQGYQYDWTIDEAKKNLLRTHTTAVSTRMLYKLAKRERFTPAKYFSIDRVFRNESLDATHLAEFHQIEGVVADRDLSLGHLIGILHEFFRKLGIEKLRFKPAFNPYTEPSMEIFSYHEGLKKWVEIGNSGIFRPEMLLPMGFPKNVSVIAWGLSLERPTMIKYGISNIRDLIGHKIDLEMVQKNPICRLD 498
            ++L++++ +DG +D+ +L+ EL  +HQ  VGAVK LQ+LGE+I A L  ++ W LT EG  +A  GSHEA +F SIPPE GL QSE+  LP GK   +GFSKAM+  W+R+DK+A  GPR+FR V+S+ D V   L  ++ GQ  K+ + + ++L+KRKL+ +  +K+Y V KG AF+ +I K E +L+ +++ SG+W+ + FK YNF A G+ P  GHLHPLLKVR+Q+RQIFLEMGFTEMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL  P EA   ++P +Y+++VK  HS GG+GSQGY+Y+W +DEA+KNLLRTHTT+ S R LY+LA+++ FTP KYFSIDRVFRNE+LDATHLAEFHQIEGVVAD  L+LGHL+G+L EFF KLGI +LRFKPA+NPYTEPSME+FSYH+GLKKWVE+GNSG+FRPEMLLPMG P+NVSVIAWGLSLERPTMIKYGI+NIR+L+GHK++L+MV  +P+CRLD
Sbjct:    9 LLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPE-GLAQSELMRLPSGK---VGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEA--LQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLD 496
The following BLAST results are available for this feature:
BLAST of TCONS_00053923-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYFA0.000e+063.16Phenylalanine--tRNA ligase alpha subunit OS=Homo s... [more]
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