TCONS_00052427-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052427-protein
Unique NameTCONS_00052427-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052427-protein ID=TCONS_00052427-protein|Name=TCONS_00052427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
KLPSELEDQEKPTKFIKTLPLFNSRRILKPISCRFRRYSSMIEIVTRTST
PSFRKAQVRFSRTEPRNKRKVNPRDLFDEIDKYDEPSSSKKARKAINTSP
TSLPPPVQRLPLFKPMTEMRCYGDAELGVQPLPSSKECQSCCTSETLMWR
DTEDGIPLCNACGIRWRKYRYRCTECWYVPMQDELKRLNCGSCGKYDTFK
RFKPFKRHKTSFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033152XLOC_033152Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052427TCONS_00052427Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 132..186
e-value: 4.2E-7
score: 39.6
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 138..170
e-value: 3.9E-11
score: 42.3
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 132..167
score: 13.56
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 133..175
e-value: 1.4E-9
score: 37.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..109
NoneNo IPR availableCDDcd00202ZnF_GATAcoord: 137..188
e-value: 5.60122E-9
score: 48.9082
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 130..181

Blast
[Close]
BLAST of TCONS_00052427-protein vs. Swiss-Prot (Human)
Match: ZGLP1 (GATA-type zinc finger protein 1 OS=Homo sapiens GN=ZGLP1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.345e-17
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0 
Query:  136 KECQSCCTSETLMWRDTEDGIPLCNACGIRWRKYRYRCTECWYVPMQDELKRLNCGSCG 194
            + C SC T  T +WRD EDG PLCNACGIR++KY  RC+ CW VP ++   +  CG CG
Sbjct:  204 RRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTRCSSCWLVPRKNVQPKRLCGRCG 262
The following BLAST results are available for this feature:
BLAST of TCONS_00052427-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZGLP18.345e-1754.24GATA-type zinc finger protein 1 OS=Homo sapiens GN... [more]
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