TCONS_00052421-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052421-protein
Unique Name	TCONS_00052421-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	488

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052421-protein ID=TCONS_00052421-protein|Name=TCONS_00052421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MVFWHRRKVLSLYKKVLLRSQEEMLTKRPLASTHVMRKYLLVFAVGLLFT
TFMFILAPRQLHSDGGDGRYRYQDNTNRRERYLYKDVKTLLAEFEGXRRE
RYLYKDVKTLLAEFEGSGSQEAIADFMESRKQVVLLKEKEKQLKRELEMT
KMKDRKIKSAKTDDVQGLVKMVQNLSSKVDLLSKQMKTSLKGREEKAHIT
NLQDVRQCKDPFILFLVTSHLSNYDRRKMIRQNWGNQDKFFQKFNKRYNL
TYDVYFNVGTGKDRESIERTKNESRVFGDLLIVDRQEDFYDLTRRLMIAF
EWSVTNCQFQYLFKIDDDIFVNIPNLFSFLSNNTFKDSFGLYAGDMNKNA
EVNRDSRSKYVVTYDEWPVETYXGLYAGDMNKNAEVNRDSRSKYVVTYDE
WPVETYPPYCSGGGFALSRTIVEKMIPYYDWANPYKIDDVYVGMLIQRAK
VRNIILYEPAHRXNAHTARQSEKYHFVRTGAPLSILVL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033146	XLOC_033146	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052421	TCONS_00052421	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002659	Glyco_trans_31

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008378	galactosyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006486	protein glycosylation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0008378	galactosyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..153
IPR002659	Glycosyl transferase, family 31	PFAM	PF01762	Galactosyl_T	coord: 377..453 e-value: 4.1E-12 score: 46.2 coord: 225..374 e-value: 8.5E-22 score: 77.8

Blast

[Close]

BLAST of TCONS_00052421-protein vs. Swiss-Prot (Human)
Match: B3GL1 (UDP-GalNAc:::beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B3GALNT1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.799e-21
Identity = 70/262 (26.72%), Postives = 120/262 (45.80%), Query Frame = 0

Query:  198 HITNLQDVRQC--KDPFILFLVTSHLSNYDRRKMIRQNWGNQDKFFQKFNKRYNLTYDV--YFNVGTGKDRES---IERTKNESRVFGDLLIVDRQEDFYDLTRRLMIAFEWSVTNC-QFQYLFKIDDDIFVNIPNLFSFLSNNTFKDSFGLYAGDMNKNAEVNRDSRSKYVVTYDEWPVETYXGLYAGDMNKNAEVNRDSRSKYVVTYDEWPVETYPPYCSGGGFALSRTIVEKMIPYYDWANPYKIDDVYVGMLIQRAKV 451
            H T L++   C  ++PF++ LVTSH S+   R+ IR  WG +  ++          Y+V  +F +G   ++E        ++E  ++GD++  D  + + +LT + ++AF W    C   +Y+ K D D+F+N  NL  +L                     +N +   K+   Y      +Y G Y                K  ++Y E+P + +PPYCSG G+ +SR +V ++        P K +DVYVG+ +   KV
Sbjct:   64 HFT-LREHSNCSHQNPFLVILVTSHPSDVKARQAIRVTWGEKKSWWG---------YEVLTFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYL---------------------LNLNHSEKFFTGYPLIDNYSYRGFY---------------QKTHISYQEYPFKVFPPYCSGLGYIMSRDLVPRIYEMMGHVKPIKFEDVYVGICLNLLKV 279

The following BLAST results are available for this feature:

BLAST of TCONS_00052421-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052421-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B3GL1	5.799e-21	26.72	UDP-GalNAc:::beta-1,3-N-acetylgalactosaminyltransf...	[more]

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TCONS_00052421-protein (polypeptide) - C. hemisphaerica