TCONS_00050608-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050608-protein
Unique NameTCONS_00050608-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050608-protein ID=TCONS_00050608-protein|Name=TCONS_00050608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
NNIFFETWKPEYNAHQETKGNCDSAGGAWSIWSDWSLCSSSCGNDGIQKR
YRKCFSDQCLIEFDVDIKTCNRQRCPVQADYYTTLWKCYYWPPVHGQWSN
WSTVNETFQNDTTCPGKLSFATRQCDSPTPEYCGMYCGSSSIKIDIFPVD
GGWSSWSGFSSCTLSCGSGTQYRTRACDNPSSQYGGKYCEGYEREVKSCN
INPCSAWSSWSCQHCSKTALRTRTCHHGCSGKTTETKEMCQIESSCFPDK
VISYNTGLWGSWRSWEYCPKGTWVVKLQTNIESHQGDGDDTALNAISLRC
NDDVGATIKSGSTNWGTWQAESQKCINGFYGGMLKFESSQGSDDDTSTNA
IRLICRDDNQWYRSGEGGWGSWTQSTYCPAGYKIVGLQTQIESDQGSDDD
TSLNGVRLLCRYFG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032056XLOC_032056Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050608TCONS_00050608Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR005515VOMI
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 188..199
score: 36.9
coord: 27..40
score: 51.53
coord: 169..180
score: 47.02
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 29..76
e-value: 5.1E-11
score: 52.6
coord: 153..205
e-value: 1.1E-14
score: 64.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 23..76
e-value: 2.9E-9
score: 36.7
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 30..75
e-value: 1.1E-6
score: 28.6
coord: 154..204
e-value: 2.4E-10
score: 40.3
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 149..204
e-value: 1.2E-16
score: 60.2
coord: 94..145
e-value: 0.016
score: 15.0
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 26..76
score: 10.572
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 150..205
score: 13.077
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 27..71
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 147..204
IPR005515Vitelline membrane outer layer protein I (VOMI)PFAMPF03762VOMIcoord: 254..410
e-value: 1.0E-34
score: 120.0
IPR005515Vitelline membrane outer layer protein I (VOMI)GENE3D2.100.10.20coord: 245..412
e-value: 3.7E-41
score: 140.6
IPR005515Vitelline membrane outer layer protein I (VOMI)SUPERFAMILY51092Vitelline membrane outer protein-I (VMO-I)coord: 251..410

Blast
BLAST of TCONS_00050608-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.112e-24
Identity = 93/321 (28.97%), Postives = 135/321 (42.06%), Query Frame = 0
Query:   27 GAWSIWSDWSLCSSSCGNDGIQKRYRKCFSDQCLIE--------FDVDIKTCNRQRCPVQADYYT-TLWK--------------------------------------CYYWP-PVHGQWSNWS---TVNETFQNDTTCPGKLSFATRQCDSPTPEYCGMYCGSSSIKIDIF-----PVDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPSSQYGGKYCEGYEREVKSCNINPC------SAWSSWSCQHCSKT-----ALRTRTCHH--------GCSGKTTETK----EMCQIESSCFPDKVISYNTGLWGSWRSWEYC 268
            G +S WS W  CS +CG  GIQKR R C  +Q L           D++++ C  + CPV   +   +LW+                                      C   P PVHG WS W    T +E+      C        R C++P P + G YC  +  ++ +      P+ G W++W+ +S+C++SCG G + RTR C +P  QYGG+ CEG + +   CN +PC      S WS W    CS+T       R RTC +         C G  ++ +    +MC ++ S             WGSW SW  C
Sbjct: 4530 GGFSQWSAWRACSVTCGK-GIQKRSRLC--NQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSES------CGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGT--CSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGS-------------WGSWHSWSQC 4826          

HSP 2 Score: 89.7373 bits (221), Expect = 4.379e-19
Identity = 69/190 (36.32%), Postives = 89/190 (46.84%), Query Frame = 0
Query:   27 GAWSIWSDWSLCSSSCGNDGIQKRYRKCFSDQCLIEFDVDIKTCNRQRCP---VQADYYTTLWKCYYWP-PVHGQWSNWS---TVNETFQNDTTCPGKLSFATRQCDSPTPEYCGMYCGSSSIKI-----DIFPVDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPSSQYGGKYCEGYEREVKSCNINPC 204
            G W+ W+ WS CS SCG  G ++R R C SD         +     ++C    VQ+D+      C   P P HG WS WS   T + T      C G      R CD+P P   G  CG    +I     D+ PVDG W SW  +S C+ SCG G + R R CD+P    GG+ C G   +V  CN+  C
Sbjct: 4701 GKWATWASWSACSVSCGG-GARQRTRGC-SD--------PVPQYGGRKCEGSDVQSDF------CNSDPCPTHGNWSPWSGWGTCSRT------CNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 3 Score: 86.2705 bits (212), Expect = 6.062e-18
Identity = 101/320 (31.56%), Postives = 135/320 (42.19%), Query Frame = 0
Query:   94 VHG---QWSNWSTVNETFQNDTTCPGKLSFATRQCDSPTPEYCGMYCGSSSIKI-----DIFPVDGGWSSWSGFSSCTLSCGSGTQYRTRACDNPSSQYGGKYCEGYEREVKSCNINPCS---AWSSWS-----CQHCSK-TALRTRTCHHG--------CSGKTTETKEMCQIESSCFPDKVISYNTGLWGSWRSWEYCPKGTWVVKLQTN------IESHQG---DGDDTALNAISLRCNDDVGATIKSGS-TNWGTWQAESQKCINGFYGGMLKFESSQGSDDDTSTNAIRLICRDDNQWYR------SGEGGWGSW 372
            VHG   QWS W   +       TC   +   +R C+ P P   G  C  S +++        PVDG WS WS +  CT SCG G Q RTR C+NPS Q+GG+ CEG   E+  CNI PC    AWS+W       + C K T  R R C++         C G  T+  ++C  E +C          G W +W SW  C         Q        +  + G   +G D      S  CN D   T   G+ + W  W   S+ C NG  G M ++ +    D+   +N  R     D+Q  R        +G WGSW
Sbjct: 4528 VHGGFSQWSAWRACS------VTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQM-QVCN-ERNC-------PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQ----SDFCNSDPCPT--HGNWSPWSGWGTCSRTC-NG--GQMRRYRTC---DNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSW 4820          
The following BLAST results are available for this feature:
BLAST of TCONS_00050608-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.112e-2428.97Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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