TCONS_00050537-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050537-protein
Unique NameTCONS_00050537-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050537-protein ID=TCONS_00050537-protein|Name=TCONS_00050537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MSTYVIKARGLPWSATPSEVTKFFSDVNILNGENGVHFTFNKEGRPSGEC
FIEVGTEADREAALAHDNEHMGKRYIEIKEAKHTEMEWVVNKMGHEPGNT
ENIVRLRGLPYGCTKQDIDAFFPGLQIIPHGITLTMDQDGRASGDAYIEF
ASSSDVEEALKKHKEKMGHRYIEVFRSSRNDIKHVVGQRNFGGGPKFMGQ
RPGPYDRPNFPRRGAPNLGPSGFNSGGGGGGGRPMRGGRSGPMHHGGRGG
RMGGGSMGGGPSSNMPQTASKTGHCVHLRGLPFEATTKDVNNFFAPLNPV
DIRILYDQVSGRAKGECDVDFSTHADAEAAMQKDKQNIGHRYIELFLQSS
PMGGSGGGWSNNDMSGGNDVAPLMGSNNRPPSLMSSGGAPQQNYSQNSYN
QYGGGYNNSQQNSGGYGGQPNNQGYNAGNQGYGTGGYNQPSGGAINNMSY
PAVQQSGGTGNNYYGSMR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032006XLOC_032006Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050537TCONS_00050537Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 275..346
e-value: 4.5E-13
score: 59.4
coord: 5..79
e-value: 6.3E-5
score: 32.4
coord: 103..175
e-value: 6.0E-5
score: 32.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 278..343
e-value: 4.0E-10
score: 39.3
coord: 105..172
e-value: 1.5E-7
score: 31.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 274..350
score: 9.354
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 102..179
score: 9.388
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 95..193
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 3..91
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 262..350
NoneNo IPR availableGENE3D3.30.70.330coord: 1..91
e-value: 6.6E-8
score: 32.1
NoneNo IPR availableGENE3D3.30.70.330coord: 259..437
e-value: 9.6E-15
score: 54.2
NoneNo IPR availableGENE3D3.30.70.330coord: 92..186
e-value: 4.8E-10
score: 39.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..433
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..271
NoneNo IPR availableCDDcd12503RRM1_hnRNPH_GRSF1_likecoord: 5..78
e-value: 1.18873E-38
score: 134.802
NoneNo IPR availableCDDcd12504RRM2_hnRNPH_likecoord: 102..178
e-value: 6.70584E-43
score: 146.373

Blast
[Close]
BLAST of TCONS_00050537-protein vs. Swiss-Prot (Human)
Match: HNRPF (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 318.161 bits (814), Expect = 7.618e-105
Identity = 189/445 (42.47%), Postives = 253/445 (56.85%), Query Frame = 0 
Query:    4 YVIKARGLPWSATPSEVTKFFSDVNILNGENGVHFTFNKEGRPSGECFIEVGTEADREAALAHDNEHMGKRYIEIKEAKHTEMEWVVNKMGHEPGNTEN--IVRLRGLPYGCTKQDIDAFFPGLQIIPHGITLTMDQDGRASGDAYIEFASSSDVEEALKKHKEKMGHRYIEVFRSSRNDIKHVVGQRNFGGGP-KFMG-QRPGPYDRPNFPRR--------GAPNLGPSGFNSGGGGGG----------------GRPMRGGRSGPMHHGGRGGRMGGGSMGGGPSSNMPQTASKTGHCVHLRGLPFEATTKDVNNFFAPLNPVDIRILYDQVSGRAKGECDVDFSTHADAEAAMQKDKQNIGHRYIELFLQSSPMGGSGGGWSNNDMSGGNDVAPLMGSNNRPPSLMSSGGAPQQNY----SQNSYNQYGGGYNNSQQNSGGY 416
            +V+K RGLPWS +  +V  F SD  I +G  GVHF + +EGR SGE F+E+G+E D + AL  D E MG RYIE+ ++  TEM+WV+   G    ++ N   VRLRGLP+GCTK++I  FF GL+I+P+GITL +D +G+ +G+A+++FAS    E+AL KHKE++GHRYIEVF+SS+ ++      R++   P KFM  QRPGPYDRP   RR        G   + P  +++G GG                  GR +    SG   H     R G                S TGHCVH+RGLP++AT  D+ NFF+PLNPV + I      GR  GE DV+F+TH +A AAM KD+ N+ HRYIELFL S+  G S G +S+  M G       MG +           A Q  Y    SQ+    YG GY+  Q + GGY
Sbjct:   11 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV------RSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDH-----RYGDSEF---------TVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT-GASNGAYSSQVMQG-------MGVS-----------AAQATYSGLESQSVSGCYGAGYSG-QNSMGGY 414
The following BLAST results are available for this feature:
BLAST of TCONS_00050537-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPF7.618e-10542.47Heterogeneous nuclear ribonucleoprotein F OS=Homo ... [more]
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