TCONS_00050454-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050454-protein
Unique NameTCONS_00050454-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050454-protein ID=TCONS_00050454-protein|Name=TCONS_00050454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
NWLLSGSRDRLVKVFDIRTMKEISTFRGHKKEAASVNWHPIYEKMFASGG
SDGSIMFWLMGCEKELGCIEGAHDGMIWDLKWHPLGHILCTGSNDHTTKF
WTRNRPGDKMRDKYNLNVLPTGFEDDYEYEIPNTSQSELDTTQETDTSIN
ENSKGEQEQEGKPDLNSPVVKALLEQSTLEVSKPKETDVPAQIYTFSRSN
QLKKFRIDPGKQRRAIEEAEKSQYDHERQMEENMEKTRNRRAMEQQQHGG
GFIPGAPSLLTMDVPVPDFLEGEYWDEGEEPSMHEAKRRYNQRTRPNDDG
MDPNAGHIGPSGFYHGPDEHFGPGGPHGPPPMRPPFDGGRFPGPRPRFDG
PPPPHDFHGPPPGHFNEGEGYDENWEGGGYEPHPPFQGQFQGGPRFRPHG
PPGPGFGPGGPRPPRMRGPRPNFHGGRPPRPPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031954XLOC_031954Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050454TCONS_00050454Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 226..247
NoneNo IPR availableGENE3D1.10.10.670coord: 55..167
e-value: 6.4E-14
score: 51.1
NoneNo IPR availableGENE3D2.80.10.50coord: 1..54
e-value: 1.7E-14
score: 53.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 293..433
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 62..102
e-value: 2.5E-5
score: 33.7
coord: 19..59
e-value: 1.6E-5
score: 34.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 72..101
e-value: 0.0012
score: 19.6
coord: 21..58
e-value: 0.014
score: 16.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 70..101
score: 10.341
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 26..58
score: 11.277
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..25
score: 9.138
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..111
score: 21.99
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 1..103

Blast
[Close]
BLAST of TCONS_00050454-protein vs. Swiss-Prot (Human)
Match: WDR33 (pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens GN=WDR33 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.239e-60
Identity = 114/247 (46.15%), Postives = 152/247 (61.54%), Query Frame = 0 
Query:    1 NWLLSGSRDRLVKVFDIRTMKE-ISTFRGHKKEAASVNWHPIYEKMFASGGSDGSIMFWLMGCEKELGCIEGAHDGMIWDLKWHPLGHILCTGSNDHTTKFWTRNRPGDKMRDKYNLNVLPTGFEDDYEYEIPNTSQSELDTTQETDTSINENSKGEQEQEGKPDLNS-----PVVKALLEQSTLEVSK-------PKETDVPAQIYTFSRSNQL----KKFRIDPGKQRRAIEEAEKSQYDHERQM 230
            NWLL+ SRD L K+FDIR +KE +  FRGHKKEA +V WHP++E +FASGGSDGS++FW +G EKE+G +E AH+GMIW L WHPLGHILC+GSNDHT+KFWTRNRPGDKMRD+YNLN+LP   ED  EY+  +   + L                EQEQ GK + N      P +   +E+   +  K       P    +PAQ       N++        ++  K+   +EE +K+Q + E++M
Sbjct:  301 NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYD--DLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEM 545
The following BLAST results are available for this feature:
BLAST of TCONS_00050454-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR332.239e-6046.15pre-mRNA 3' end processing protein WDR33 OS=Homo s... [more]
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