TCONS_00050125-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050125-protein
Unique Name	TCONS_00050125-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1025

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050125-protein ID=TCONS_00050125-protein|Name=TCONS_00050125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1025bp
MGKSKGRGRGRGRGRGETGAPSPQAPGNATNSDSPPKSASNGVGRGRGNK
PTSANSQHNAPEQKPAVPQQFQQLAQDQRPLIQNQHQQRQPQANLQAQPQ
PPAQPQAQPQPQPPAQLQVQPLTQPQVQPPTQQRQPQPRPAQQTPAQQTP
ITSPKRDGINFNPREVMQLPLRPSHGKAGRKIQLNANFYELKIPTNAIIH
HYDVVISDGKQEDKIPKPMARQLMQKFTRSNKKLFRTQPVFDGRKNMYTK
EPLDFQSSRKFEGITFQEEGDDRERTFSITLKWVNQLNLKYLQDAMEGKA
QSVPQEIYQGLDMVLRYAATLCYVPVGSKFFTSNGSVNLGGGREMWPGYN
LTVRPTGRWKLMLNIDTSASGFYRHISVLQYLNEILPRFDIRRGEMMDRD
RKAFERELKGLKIQITYMGKQKRKYRVNGLTKLGASKQTFTLDNNEKVTV
QSYFRKEKNVTLKYANLPCLHVGNPQKNVYIPMEVCEMVPGQRVMKKLTE
DQTAIMIKNTAKKPEMRKAAIDRIVSDSNYAQDPYVKGFGIQVSQKMTTV
DARVINPPDVQYSGGKIMKPSGGAWNMKNIRVFQGANIQAWGMVVCNFFG
RPFEEDSAWRFEEELIKKAQEMGINMGRSVFYKVLNKFEDPTKVLSEGFA
TNKNLDLLVAVLPGKTPFYQCLKRMCETENGYVDAAADPRVQEILKNRGL
STQCIQIKNAIKCSPMTLAQLLLKVNAKMGGINNSISNSNKVTRPIRVFK
EPVLFLGADVTHPGIGDKESPSIAAIVGSVDPVPSKYAVCVRVQKHRQEM
IEDMKNVAKDLLKQFYINTKSKPCKIVMYRDGVSEGQFQQVLQHEMRAIQ
QACSELEKGYQPAITFIVVQKRHHARFFPMPGSRDVDRSGNCLPGTTIDS
GVCHPTEYDYYQYSHAGIQGTSRPSHYHVLWDDNDFEPDELQSLSFMLCH
LYVRCTRSVSIPAPAYYAHHVAFRAKDHLLGRIDDDGTSSSGRSDVGNVT
EDMARLNLREIVKPHPKLISRMYFV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031732	XLOC_031732	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050125	TCONS_00050125	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003165	Piwi
IPR003100	PAZ_dom
IPR014811	ArgoL1
IPR032474	Argonaute_N
IPR012337	RNaseH-like_dom
IPR032472	ArgoL2
IPR032473	Argonaute_Mid_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003165	Piwi domain	SMART	SM00950	Piwi_a_2	coord: 657..980 e-value: 5.4E-102 score: 354.8
IPR003165	Piwi domain	PFAM	PF02171	Piwi	coord: 693..978 e-value: 2.9E-94 score: 315.6
IPR003165	Piwi domain	PROSITE	PS50822	PIWI	coord: 697..980 score: 43.243
IPR003100	PAZ domain	SMART	SM00949	PAZ_2_a_3	coord: 380..512 e-value: 8.1E-6 score: 33.8
IPR003100	PAZ domain	PFAM	PF02170	PAZ	coord: 381..505 e-value: 1.9E-24 score: 85.9
IPR003100	PAZ domain	PROSITE	PS50821	PAZ	coord: 376..490 score: 25.589
IPR003100	PAZ domain	SUPERFAMILY	101690	PAZ domain	coord: 372..530
IPR014811	Argonaute, linker 1 domain	SMART	SM01163	DUF1785_2	coord: 324..375 e-value: 5.8E-13 score: 59.1
IPR014811	Argonaute, linker 1 domain	PFAM	PF08699	ArgoL1	coord: 325..374 e-value: 1.4E-12 score: 46.9
None	No IPR available	GENE3D	2.170.260.10		coord: 374..496 e-value: 8.3E-38 score: 128.6
None	No IPR available	GENE3D	3.40.50.2300		coord: 554..739 e-value: 5.5E-38 score: 129.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..161
None	No IPR available	CDD	cd04657	Piwi_ago-like	coord: 534..979 e-value: 9.40765E-179 score: 529.107
None	No IPR available	CDD	cd02846	PAZ_argonaute_like	coord: 375..489 e-value: 7.89807E-33 score: 123.196
IPR032474	Protein argonaute, N-terminal	PFAM	PF16486	ArgoN	coord: 180..315 e-value: 1.5E-25 score: 90.3
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 747..997 e-value: 3.5E-104 score: 347.0
IPR012337	Ribonuclease H-like domain	SUPERFAMILY	53098	Ribonuclease H-like	coord: 650..978
IPR032472	Argonaute linker 2 domain	PFAM	PF16488	ArgoL2	coord: 517..562 e-value: 3.6E-14 score: 52.7
IPR032473	Protein argonaute, Mid domain	PFAM	PF16487	ArgoMid	coord: 570..629 e-value: 6.2E-7 score: 29.5

Blast

[Close]

BLAST of TCONS_00050125-protein vs. Swiss-Prot (Human)
Match: AGO2 (Protein argonaute-2 OS=Homo sapiens GN=AGO2 PE=1 SV=3)

HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 393/881 (44.61%), Postives = 551/881 (62.54%), Query Frame = 0

Query:  158 GINFNPREVMQLPLRPSHGKAGRKIQLNANFYELKIPTNAIIHHYDVVISDGKQEDKIPKPMARQLMQKFTRSNKKLF-RTQPVFDGRKNMYTKEPLDFQSSRKFEGITFQEEGDDRERTFSITLKWVNQLNLKYLQDAMEGKAQSVPQEIYQGLDMVLRYAATLCYVPVGSKFFT-SNGSVN-LGGGREMWPGYNLTVRPTGRWKLMLNIDTSASGFYRHISVLQYLNEILPRFDIRRGE--MMDRDRKAFERELKGLKIQITYMGKQKRKYRVNGLTKLGASKQTFTLDNNE----KVTVQSYFRKEKNVTLKYANLPCLHVGNPQKNVYIPMEVCEMVPGQRVMKKLTEDQTAIMIKNTAKKPEMRKAAIDRIVSDSNYAQDPYVKGFGIQVSQKMTTVDARVINPPDVQYSG--GKIMKPSGGAWNMKNIRVFQGANIQAWGMVVCNFFGRPFEEDSAWRFEEELIKKAQEMGINM-GRSVFYKVLNKFEDPTKVLSEGFATNKNLDLLVAVLPGKTPFYQCLKRMCETENGYVDAAADPRVQEILKNRGLSTQCIQIKNAIKCSPMTLAQLLLKVNAKMGGINNSISNSNKVTRPIRVFKEPVLFLGADVTHPGIGDKESPSIAAIVGSVDPVPSKYAVCVRVQKHRQEMIEDMKNVAKDLLKQFYINTKSKPCKIVMYRDGVSEGQFQQVLQHEMRAIQQACSELEKGYQPAITFIVVQKRHHARFFPMPGSRDVDRSGNCLPGTTIDSGVCHPTEYDYYQYSHAGIQGTSRPSHYHVLWDDNDFEPDELQSLSFMLCHLYVRCTRSVSIPAPAYYAHHVAFRAKDHLLGRIDD--DGTSSSGRSDVGNVTEDMARLNLREIVKPHPKLISRMYF 1024
            G  F P      P RP  G +GR I+L ANF+E+ IP    I+HY++ I   K   ++ + +   ++Q F     ++F   +PVFDGRKN+YT  PL     +    +T   EG DR   F +++KWV+ ++L+ L DA+ G+  SVP E  Q LD+V+R+  ++ Y PVG  FFT S G  N LGGGRE+W G++ +VRP+  WK+MLNID SA+ FY+   V++++ E+L    I   +  + D  R  F +E+KGLK++IT+ G+ KRKYRV  +T+  AS QTF L        + TV  YF+    + L+Y +LPCL VG  QK+ Y+P+EVC +V GQR +KKLT++QT+ MI+ TA+    R+  I +++  +++  DPYV+ FGI V  +MT V  RV+ PP + Y G    I  P  G W+M+N +   G  I+ W  + C    R   E     F E+L K +++ G+ + G+  F K     +    +      T   L L+V +LPGKTP Y  +KR+ +T               +L   G++TQC+Q+KN  + +P TL+ L LK+N K+GG+NN +       RP  VF++PV+FLGADVTHP  GD + PSIAA+VGS+D  P++Y   VRVQ+HRQE+I+D+  + ++LL QFY +T+ KP +I+ YRDGVSEGQFQQVL HE+ AI++AC +LEK YQP ITFIVVQKRHH R F    +  V +SGN   GTT+D+ + HPTE+D+Y  SHAGIQGTSRPSHYHVLWDDN F  DELQ L++ LCH YVRCTRSVSIPAPAYYAH VAFRA+ HL+ +  D  +G+ +SG+S+ G   + +A+      V+ H   +  MYF
Sbjct:   20 GYAFKP------PPRPDFGTSGRTIKLQANFFEMDIP-KIDIYHYELDIKPEKCPRRVNREIVEHMVQHF---KTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDR--IFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPS-LWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWA-IACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDT---------------VL---GMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQG---RP-PVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN-GRDHQALAK-----AVQVHQDTLRTMYF 858

The following BLAST results are available for this feature:

BLAST of TCONS_00050125-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050125-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGO2	0.000e+0	44.61	Protein argonaute-2 OS=Homo sapiens GN=AGO2 PE=1 S...	[more]

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TCONS_00050125-protein (polypeptide) - C. hemisphaerica