TCONS_00050113-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050113-protein
Unique Name	TCONS_00050113-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	263

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050113-protein ID=TCONS_00050113-protein|Name=TCONS_00050113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MMTSNTPTNGGSGSSTKVDCTRANQNVWLVKVPKYMAEVWSKADGSGIVG
SLRIPVNSGPNNVSFHLAQHLTKLGESGDIPEKHKFVMSDFRQTMGVFSE
TPPDEDEPSESTRDKIAFEGTISKRIDCRPIQSTAYMSMKMTDIKKALKP
KRTTVFTDEKVSSFRPVNDHSSMNEQAEKKRSTEKRVRSERDEVLETIFS
AFEKHQYYTLKDLIGITRQPVTHLKSILRDVCNYNLKNPHKNTYELKPEY
RHYNKSDDTSESS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031727	XLOC_031727	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050113	TCONS_00050113	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011991	WHTH_DNA-bd_dom
IPR003196	TFIIF_beta
IPR011039	TFIIF_interaction

Vocabulary: **Biological Process**
Term	Definition
GO:0006366	transcription from RNA polymerase II promoter
GO:0006367	transcription initiation from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0005674	transcription factor TFIIF complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005674	transcription factor TFIIF complex
molecular_function	GO:0003824	catalytic activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 173..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..188
None	No IPR available	CDD	cd07980	TFIIF_beta	coord: 17..130 e-value: 1.04628E-29 score: 108.568
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 186..254 e-value: 1.4E-31 score: 108.2
IPR011991	Winged helix-turn-helix DNA-binding domain	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 186..253
IPR003196	Transcription initiation factor IIF, beta subunit	PFAM	PF02270	TFIIF_beta	coord: 108..251 e-value: 1.1E-36 score: 127.4
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 15..131

Blast

[Close]

BLAST of TCONS_00050113-protein vs. Swiss-Prot (Human)
Match: T2FB (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.071e-64
Identity = 111/254 (43.70%), Postives = 155/254 (61.02%), Query Frame = 0

Query:   17 KVDCTRANQN--VWLVKVPKYMAEVWSKADGSGIVGSLRIPVNSGPNNVSFHLAQHLTKLGESG------DIPEKHKFVMSDFR-QTMGVFSETPPDEDEPSESTRDKIAFEGTISKRIDCRPIQSTAYMSMKMTDIKKALKPKRTTVFTDEKVSS-FRPVNDHSSMNEQAEKKRSTEKRVRSERDEVLETIFSAFEKHQYYTLKDLIGITRQPVTHLKSILRDVCNYNLKNPHKNTYELKPEYRHYN---KSD 257
            ++D T A QN  VWLVKVPKY+++ W+KA G G VG LRI    G   VSF L + L  + + G        P +H FV+     QT+ VF+E          S+ DK++ EG + +R +CRP  S  YM +K   I+++ KP R +   D+ V++ ++PV +H    E   KK+   KR R+++  VL+ +FSAFEKHQYY LKDL+ IT+QPV +LK IL+++   N+K  HKNT+ELKPEYRHY    KSD
Sbjct:    6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTE----------SSSDKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEKSD 249

The following BLAST results are available for this feature:

BLAST of TCONS_00050113-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050113-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
T2FB	1.071e-64	43.70	General transcription factor IIF subunit 2 OS=Homo...	[more]

You are here

TCONS_00050113-protein (polypeptide) - C. hemisphaerica