TCONS_00050077-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050077-protein
Unique NameTCONS_00050077-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length950

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050077-protein ID=TCONS_00050077-protein|Name=TCONS_00050077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp
MADEDLKKSHRARQSGPKAEKKKSGKHEPDRKRNPKAFAIQSVNKVAKQV
HRSLDKETSKHHVPLVDRTAVEPPPVVVAVVGPPKVGKTTLINNMIKSYT
REKISDLKGPVTIVSGKSRRLTLMECNNDINSMIDIAKVADLVLLLIDAS
FGFEMEIFEFLNIAQVHGFPKIMGVLTHLDLLKKNKSLKKIKKTLKQRFW
TEVYQGAKLFYLTNITHGLYPKSEIHNLGRFISVMKFRPLMWRSSHPYVV
VDRYEDLTDPEQVEKDDTCNRTVSLYGYMRGAHLKYNSKIHLIGCGDYNI
QSVHGLPDPCPLPDKVKKRSLSEKERLIYAPMSGVGGIVYDKDAVYIDLG
GSKAGQRAAAEEAALSGKTPAAAISEEPENELISSLHSTQTFIDSKMEAS
ELSIFKNSAPVTADTFKSDSHWTMPEEEEEIDQSDGRKRRRAVFSSTDEQ
LMGNGGESSGEEDEEEESDFEGKEGNDQSDEEMMMTSPKKKSKIQEDDSG
DEAVEFEDDSSEDEENVDLLKTSKTSSDQKKTDINLWKNIAEMINNKSDR
QTDIRKVVYGQDLAVENEDSESDDEDLVAGIFQTQKNKLKKKKNALYHSR
DCSKTDIGKDALDVAIDEIKELIKDCFVTGKWEESEDAEALLNEAEGDED
EDLYGDFEDLETGESHEGEGGGEGEDESDQSMDEGSDEDDKPEEFTGLKK
TRRELRAEKKKKLKEMFNADYDDEKGANTFYDDLKNTMTEQADLNRKEFE
NMDDNVRVQYEGFRAGMYVRIELSGMPCELVKNFDPTYPVIIGGLLPGED
NIGYIQTRFKKHRWFDKILKNRDPLIVSLGWRRFQTMPLYSVQDHNGRFR
SLKYTPQHLHCIATMYGPVTPPSTGLLAIQSVADKTAKFRIAATGVVVDL
DKSIKVVKKLKLVGTPLKIFKNTAFVKGMFNTALEVAKFEGASIRTVSGX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031709XLOC_031709Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050077TCONS_00050077Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007034BMS1_TSR1_C
IPR012948AARP2CN
IPR030387G_Bms1/Tsr1_dom
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalSMARTSM01362DUF663_2coord: 688..949
e-value: 1.3E-119
score: 413.3
IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalPFAMPF04950RIBIOP_Ccoord: 700..949
e-value: 3.6E-75
score: 253.0
IPR012948AARP2CNSMARTSM00785aarp2cn2coord: 224..310
e-value: 5.0E-37
score: 139.0
IPR012948AARP2CNPFAMPF08142AARP2CNcoord: 224..309
e-value: 6.4E-30
score: 103.0
NoneNo IPR availableGENE3D3.40.50.300coord: 58..227
e-value: 8.7E-17
score: 60.5
NoneNo IPR availableCDDcd01882BMS1coord: 37..266
e-value: 1.2503E-118
score: 363.197
IPR030387Bms1/Tsr1-type G domainPROSITEPS51714G_BMS1coord: 74..244
score: 13.353
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 72..207

Blast
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BLAST of TCONS_00050077-protein vs. Swiss-Prot (Human)
Match: BMS1 (Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 1.661e-130
Identity = 232/449 (51.67%), Postives = 310/449 (69.04%), Query Frame = 0 
Query:  501 DEAVEFEDDSSEDEENVDLLKTSKTSSDQKKTDINLWKNIAEMINNKSDRQTDIRKVVYGQDLAVENEDSESDDEDLVAGIFQTQKNKLKKKKNALYHSRDCSKTDIGKDALDVAIDEIKELIKDCFVTGKWEESEDAEALLNEAEGDEDEDLYGDFEDLETGESHEGEGGGEGEDESDQSMDEGSDEDDKPEEFTGLKKTRRELRAEKKKKLKEMFNADYDDEKGANTFYDDLKNTMTEQADLNRKEFENMDDNVRVQYEGFRAGMYVRIELSGMPCELVKNFDPTYPVIIGGLLPGEDNIGYIQTRFKKHRWFDKILKNRDPLIVSLGWRRFQTMPLYSVQDHNGRFRSLKYTPQHLHCIATMYGPVTPPSTGLLAIQSVADKTAKFRIAATGVVVDLDKSIKVVKKLKLVGTPLKIFKNTAFVKGMFNTALEVAKFEGASIRTVSG 949
            DE  + E+   E+E+  +    SK +S   K   +L +  AE    +     ++RK++YG  +  +NE+ + D  + + G+F+  +   + K  A   S DCS+  + +   D  ++E+   I+DCFVTGKWE+ +DA  +L E     DE+LYGDFEDLETG+ H+G+ G   ++E  +   E  +E D  EE     ++ ++   +KK+KLKEMF+A+YD+  G +T++DDLK  M +QA LNR EFE+ DD  RVQYEGFR GMYVRIE+  +PCE V+NFDP YP+I+GGL   E N+GY+Q R KKHRW+ KILK+RDP+I S+GWRRFQT+PLY ++DHNGR R LKYTPQH+HC A  +GP+TP  TG LAIQSV+     FRIAATGVV+DLDKSIK+VKKLKL G P KIFKNT+F+KGMFN+ALEVAKFEGA IRTVSG
Sbjct:  636 DETSDIENLLKEEEDYKEENNDSKETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGT-VTEDNEEEDDDTLEELGGLFRVNQPDRECKHKA--DSLDCSRFLV-EAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAE-----DEELYGDFEDLETGDVHKGKSGPNTQNEDIEK--EVKEEIDPDEE-----ESAKKKHLDKKRKLKEMFDAEYDE--GESTYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSG 1066
The following BLAST results are available for this feature:
BLAST of TCONS_00050077-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BMS11.661e-13051.67Ribosome biogenesis protein BMS1 homolog OS=Homo s... [more]
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