TCONS_00050020-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050020-protein
Unique NameTCONS_00050020-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050020-protein ID=TCONS_00050020-protein|Name=TCONS_00050020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
KELRFNNNNNNNEKFSSKDNASMTTNDKIKRDHLDVLLREFQDVMNEYNR
VQLVHRDQCKSRIKRQFMLIDRSVDNEKIEEMLEQGNLSVFHQDIAFEDI
EKANKSLQIVEERHADILKLEQSIKDLFEIFQEIATLVDSQSEMIDNIQR
NVQETMLKVEETKKTLKIARRYRSRTIFSFCCPVFLRKSMCCNIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031687XLOC_031687Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050020TCONS_00050020Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR006011Syntaxin_N
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableGENE3D1.20.5.110coord: 129..173
e-value: 2.0E-11
score: 43.3
NoneNo IPR availableGENE3D1.20.58.70coord: 3..128
e-value: 2.1E-25
score: 89.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd15848SNARE_syntaxin1-likecoord: 107..167
e-value: 8.67989E-18
score: 72.9537
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 102..169
e-value: 2.0E-13
score: 60.6
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 107..169
score: 17.599
IPR006011Syntaxin, N-terminal domainPFAMPF00804Syntaxincoord: 8..141
e-value: 1.4E-30
score: 106.4
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 15..161

Blast
[Close]
BLAST of TCONS_00050020-protein vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.925e-33
Identity = 67/171 (39.18%), Postives = 105/171 (61.40%), Query Frame = 0 
Query:   28 KIKRDHLDVLLREFQDVMNEYNRVQLVHRDQCKSRIKRQFMLIDRSVDNEKIEEMLEQGNLSVFHQDIAFEDIEKANKSLQIVEERHADILKLEQSIKDLFEIFQEIATLVDSQSEMIDNIQRNVQETMLKVE----ETKKTLKIARRYRSRTIFSFCCPVFLRKSMCCNI 194
            +I++     L R+F +VM EYN  Q  +RD+CK RI+RQ  +  R+  NE++E+MLE G L++F  DI   D +   ++L  +E RH +I+KLE SI++L ++F ++A LV+SQ EMID I+ NV+ ++  VE    +TKK +K   + R + I    C V L   +  +I
Sbjct:  113 RIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDDIKM-DSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGVVLASSI 282
The following BLAST results are available for this feature:
BLAST of TCONS_00050020-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1B8.925e-3339.18Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1[more]
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