unclassified Wnt ligand X1A (polypeptide) - C. hemisphaerica

Overview


Name	unclassified Wnt ligand X1A
Unique Name	TCONS_00050019-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	400

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050019-protein ID=TCONS_00050019-protein|Name=unclassified Wnt ligand X1A|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
MVWLKIVLFLILVQTVSSHWWLSSQVFTVGSNGGCNNIAGLVKEQKSLCR
KYPKMMEVVGQGAKLGLQECQHQFATSKWNCSHLDQRKKGLLGLLTSKGN
REAAFFQAITSAGVVYKVTRACNNNKYSAICTCEKRHGPIPLQNNQPLKK
GEKRPSFKWFYCNDNINFGMKFAENFLDAREVGNDARVLMNKQNNLAGRA
VVKSLMTFECTCHGVSGACNVKTCRNSLPNFYRVGDYLQQQYHGAIFVTL
DQVRNIITPRNPGVKEHSPKDLVYLEESPDYCEVNIKEGTLGVAGRRCNK
TSPGPDGCSVMCCGMGHHTKKVWVESNCDCTFIWCCKVQCQKCRSLQQQH
FCRAKKKRRKNKNKRRRKNRNGNHQIQRDEPSNHIMDRKKRSVMLREYLT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031686	XLOC_031686	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050019	TCONS_00050019	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005817	Wnt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005102	receptor binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development
GO:0016055	Wnt signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0016055	Wnt signaling pathway
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005102	receptor binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005817	Wnt	PRINTS	PR01349	WNTPROTEIN	coord: 157..169 score: 43.06 coord: 271..282 score: 70.7 coord: 211..225 score: 63.66 coord: 101..115 score: 60.98
IPR005817	Wnt	SMART	SM00097	wnt1_3	coord: 37..353 e-value: 3.2E-122 score: 422.0
IPR005817	Wnt	PFAM	PF00110	wnt	coord: 38..353 e-value: 3.8E-102 score: 341.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..400

Blast

[Close]

BLAST of unclassified Wnt ligand X1A vs. Swiss-Prot (Human)
Match: WNT2B (Protein Wnt-2b OS=Homo sapiens GN=WNT2B PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 6.531e-100
Identity = 149/346 (43.06%), Postives = 215/346 (62.14%), Query Frame = 0

Query:   16 VSSHWWLSSQVFTVGSNGGCNNIAGLVKEQKSLCRKYPKMMEVVGQGAKLGLQECQHQFATSKWNCSHLDQRKKGLLGLLTSKGNREAAFFQAITSAGVVYKVTRACNNNKYSAICTCEKRHGPIPLQNNQPLKKG---EKRPSFKWFYCNDNINFGMKFAENFLDAREVG-NDARVLMNKQNNLAGRAVVKSLMTFECTCHGVSGACNVKTCRNSLPNFYRVGDYLQQQYHGAIFVTLDQVRNIITPRNPGVKEHSPKDLVYLEESPDYCEVNIKEGTLGVAGRRCNKTSPGPDGCSVMCCGMGHHTKKVWVESNCDCTFIWCCKVQCQKCRSLQQQHFCRAKKK 357
            V + WW    +  +G+   C+NI GLV  Q+ LC++YP +M  VG+GA+  ++ECQHQF   +WNC+ LD R   + G +  + +REAAF  AI+SAGVV+ +TRAC+  + S +C+C+            P  +G   ++R  F W  C+DNI++G++FA+ F+DA+E    DAR LMN  NN  GR  V+  +  EC CHGVSG+C ++TC  +L +F R GDYL+++Y GA+ V   Q     T    G +  +  DLVY + SPDYC ++   G+LG AGR C+KTS G DGC +MCCG G+ T +V   + C+C F WCC V+C++CR+    H C+A KK
Sbjct:   56 VDTSWWY---IGALGARVICDNIPGLVSRQRQLCQRYPDIMRSVGEGAREWIRECQHQFRHHRWNCTTLD-RDHTVFGRVMLRSSREAAFVYAISSAGVVHAITRACSQGELS-VCSCD------------PYTRGRHHDQRGDFDWGGCSDNIHYGVRFAKAFVDAKEKRLKDARALMNLHNNRCGRTAVRRFLKLECKCHGVSGSCTLRTCWRALSDFRRTGDYLRRRYDGAVQVMATQDGANFTAARQGYRRATRTDLVYFDNSPDYCVLDKAAGSLGTAGRVCSKTSKGTDGCEIMCCGRGYDTTRVTRVTQCECKFHWCCAVRCKECRNTVDVHTCKAPKK 384

The following BLAST results are available for this feature:

BLAST of unclassified Wnt ligand X1A vs. Swiss-Prot (Human)

BLAST of unclassified Wnt ligand X1A vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WNT2B	6.531e-100	43.06	Protein Wnt-2b OS=Homo sapiens GN=WNT2B PE=1 SV=2	[more]

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unclassified Wnt ligand X1A (polypeptide) - C. hemisphaerica