TCONS_00049972-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049972-protein
Unique NameTCONS_00049972-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049972-protein ID=TCONS_00049972-protein|Name=TCONS_00049972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MKLTIGIIFFALYTVNAVDLKMCERQHGGLGNWMDWGPCKNKMGYECRHR
YCDSPVPKYGGYPCSGETTQYRKIEKVDGGYGPWMKWGACKEVGYQCRFR
FCDSPKPMYGGSPCEGDMMEKRMTPAVNGGFGKWMAWGPCSKTCGEGGVQ
TRHRFCNYPNPMYGGMDCDAKDSMETRACPAMYMEACPPPGVLGTKGTYG
KCSRGCGGQRQVTYPCNMPEVYSADAKCYMGCSNTMQYEKCKCESDGRNV
CRSCKSRTDRMIQKYRLNVTDVGLACKLENDLAAKICGRLSGGIRDMYPS
NDFYFLHCSDDGPWCKPCATRDLVYNPKCGQCEKTRTSPCTGPRKWVKKD
APSSNDQVADILNDADLW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031666XLOC_031666Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049972TCONS_00049972Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 81..129
e-value: 0.84
score: 10.0
coord: 30..77
e-value: 2.5
score: 5.8
coord: 131..188
e-value: 2.9E-13
score: 60.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 31..72
e-value: 3.3E-4
score: 20.7
coord: 82..122
e-value: 0.0067
score: 16.5
coord: 133..180
e-value: 3.1E-10
score: 40.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 127..183
e-value: 1.6E-14
score: 53.4
coord: 77..125
e-value: 2.3E-7
score: 30.5
coord: 26..75
e-value: 4.8E-8
score: 32.7
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 128..180
score: 11.733
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 78..124
score: 8.799
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 127..179
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 77..122
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 27..72

Blast
[Close]
BLAST of TCONS_00049972-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.859e-34
Identity = 77/216 (35.65%), Postives = 101/216 (46.76%), Query Frame = 0 
Query:   27 HGGLGNWMDWGPCKNK--MGYECRHRYCDSPVPKYGGYPCSGETTQYRKIEK----VDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEGDMMEKRMTP----AVNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETRACPAMYMEACPPPGVLGTKGTYGKCSRGC-GGQRQVTYPCNMPEVYSADAKC 228
            HGG   W  W  C      G + R R C+ P+P  GG PC G   + R  +     VDG +  W  W  C      G Q R R C++P   +GG PCEG+ +E  M       V+G +  W  WG CS++CG+G  QTR R CN P P +GG  CD  ++ + + C       CP  G   T  ++  CS  C GG RQ T  C+ P       KC
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKG-TQTRARLCNNPPPAFGGSYCDGAET-QMQVCNE---RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC 4739

HSP 2 Score: 124.02 bits (310), Expect = 1.015e-30
Identity = 77/248 (31.05%), Postives = 108/248 (43.55%), Query Frame = 0 
Query:   16 NAVDLKMCERQ----HGGLGNWMDWGPCKNK--MGYECRHRYCDSPVPKYGGYPCSGETTQYRKIEK----VDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEGDMMEKRMTPA----VNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETRACPAMYMEACPPPGVLGTKGTYGKCSRGC-GGQRQVTYPCNMPEVYSADAKCYMGCSNTMQYEKCKCES 245
            NAV++ MC  +    HG    W  WG C      G + R R C++P P +GG  C G  TQ +   +    + G +  W  W AC      G + R R C  P P YGG  CEG  ++     +     +G +  W  WG CS+TC  GG   R+R C+ P P  GG  C   DS   R    M    CP  G  G+  ++ +CS  C GG++     C+ P        C     +T Q  +C  ++
Sbjct: 4628 NAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTC-NGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM----CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPC---PGDTTQVTRCNVQA 4867

HSP 3 Score: 111.694 bits (278), Expect = 1.421e-26
Identity = 64/173 (36.99%), Postives = 78/173 (45.09%), Query Frame = 0 
Query:   27 HGGLGNWMDWGPCKNKMGYECRHRY--CDSPVPKYGGYPCSGETTQYRKIEK----VDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEG-DMMEKR----MTPAVNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETR----ACPA 181
            HG    W  W  C    G   R R   C  PVP+YGG  C G   Q            G + PW  WG C      G   R+R CD+P P  GG  C G D   +R    M P V+G +G W +W  CS +CG GG +TR R C++P P+ GG  C    +  TR    ACP 
Sbjct: 4700 HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP-VDGSWGSWHSWSQCSASCG-GGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870

HSP 4 Score: 93.9745 bits (232), Expect = 9.680e-21
Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 0 
Query:   74 IEKVDGGYGPWMKWGACKEV---GYQCRFRFCDSPKPMYGGSPCEGDMMEKRMTP----AVNGGFGKWMAWGPCSKTCGEGGVQTRHRFCNYPNPMYGGMDCDAKDSMETRACPAMYMEACPPPGVLGTKGTYGKCSRGCG-GQRQVTYPCNMP 219
            I +V GG+  W  W AC      G Q R R C+ P P  GG PC+G  +E R        V+G + +W  W  C+++CG G  QTR R CN P+  +GG  C+  +++E   C    +  CP  G       +G CS  CG G +     CN P
Sbjct: 4525 IVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGN-QTRTRTCNNPSVQHGGRPCEG-NAVEIIMCN---IRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNP 4673
The following BLAST results are available for this feature:
BLAST of TCONS_00049972-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.859e-3435.65Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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