TCONS_00048501-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048501-protein
Unique NameTCONS_00048501-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048501-protein ID=TCONS_00048501-protein|Name=TCONS_00048501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=703bp
MEKTPPPFNTGLDEAQQNINTISSEEQPTDCCQDNETVQNQIDNREESGD
RINISERCTLCLNQIESESSITQKQSLKCLKCLKIIESVPSGFPFEMTAS
YTVKEYECPICLVLIRDATELPCKHLMCRECLIHYENGVMGKSADESQPK
FICSICQAEYRMEEKFEVKSTDRIIQTSLPVYCKQATKGCQWTGCIKDYQ
DHTKYCDYLLVPCPNEGCLEQIMRLNLITHKNNCQFRNVACPFCKQTICF
NELWRHHGVCPKFKIPCPNKGCMAFIERSKVPKHRQEECEFQLVQCQYSD
LGCSLKVLKKDIHIHMKEEKSKHELLLLSAVKEMKLNEQIHQNKIENLEK
MIVIKDEKLNETQNKLMEVKLQLTQTVSKLTNIDMQVENLKTFANISSMM
HSVLSHPMSQMKISHGETLFQRNYWRSENVQKWRCLVEQGSIHPPKESHK
ESEPERSNETLEVCIKNIELEANNIINEDTEQVEKKVTKRQENAPSEKPA
NKDNTTPTKPSKEGNYLKTLYQALEQYSKTIHCPTYSERLWQLYFNTESG
HVSADGEFMKISCPFDAKTIKLKTFYDLQQFNQGIRQSKHKWCQNSYYLA
WRLNQDGGLEVNLFLTHEKHVWLLHREEEHQRIPLTEDGTEQLINSGYII
IDSIILATEWCSNILQTYQSNSASKEQDNLDKTTGKIVQLQNIFHGVETS
SMF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030848XLOC_030848Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048501TCONS_00048501Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 331..365
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 483..514
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 102..163
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 108..156
e-value: 3.1E-4
score: 30.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 108..157
score: 9.937
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 256..314
e-value: 5.1E-12
score: 46.2
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 202..245
score: 10.369
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 256..307
score: 13.107
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 108..156
e-value: 9.4E-6
score: 25.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 101..169
e-value: 1.0E-10
score: 40.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 173..219
e-value: 1.0E-13
score: 50.7
coord: 220..257
e-value: 2.8E-8
score: 33.3
coord: 258..316
e-value: 4.0E-11
score: 42.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 123..132
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 178..238
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 239..330

Blast
[Close]
BLAST of TCONS_00048501-protein vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.046e-19
Identity = 88/324 (27.16%), Postives = 144/324 (44.44%), Query Frame = 0 
Query:   95 FEMTASYTVKE-----YECPICLVLIRDATELPCKHLMCRECLIHYENGVMGKSADESQPKFICSICQAEYRMEEKFEVKSTDRIIQTSLPVYCKQATKGCQWTGCIKDYQDHTKYCDYLLVPCPNEGCLEQIMRLNLITH-KNNCQFRNVACPFCKQTICFNELWRH-HGVCPKFKIPCPNKGCMAFIERSKVPKHRQEECEFQLVQCQYSDLGCSLKVLKKDIHIHMKEEKSKHELLLLSAVKEMKLNEQIHQNKIENLEKMIVIKDEK---LNETQNKLMEVKLQLTQTVSK----LTNIDMQVENLKTFANISSMMHSVL 404
            FE +  Y   E     Y+C  C  ++ +  +  C H  C+ C++         S  E     IC + +   + +E F+     R +  +L VYC  A  GC     +  YQDH + C +  V C NE C E ++R +L  H   +CQFR   C +CK+ +    L  H   +CP++ + CPN  C   I +++V +H    C      C +   GC++   ++++  H      +H  L+L   K ++L EQ     I +L K +  K+ K   L ET  KL +   Q  Q   K    L NI +   ++   A + + +H +L
Sbjct:   27 FEPSIEYQFVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCIL---------SLRELNTVPICPVDKEVIKSQEVFKDNCCKREV-LNLYVYCSNAP-GCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPN-NCAKIILKTEVDEHL-AVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLE--KNVQLEEQ-----ISDLHKSLEQKESKIQQLAETIKKLEKEFKQFAQLFGKNGSFLPNIQVFASHIDKSAWLEAQVHQLL 330
The following BLAST results are available for this feature:
BLAST of TCONS_00048501-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF55.046e-1927.16TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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